MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.8 nTPM
HPA Brain:48.2 nTPM
GTEx:81.8 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:138.5 nTPM
Mouse:26.2 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 48.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.7
1827 Male, age 72, unknown 48.5
1870 Female, age 42, unknown 47.3
1833 Male, age 53, unknown 46.8
2828 Female, age 72, unknown 45.7
2586 Male, age 75, left hemisphere 44.0
2019 Male, age 18, unknown 41.0
1830 Male, age 51, unknown 40.7
2411 Female, age 72, unknown 40.3
2666 Male, age 74, left hemisphere 37.2
2219 Male, age 76, both hemispheres 35.5
Dorsal raphe nucleus
nTPM: 48.2
2298 Female, age 72, unknown 61.7
1828 Male, age 53, unknown 46.8
2016 Female, age 72, unknown 45.6
2047 Male, age 72, unknown 44.2
2750 Male, age 76, both hemispheres 42.5
Inferior colliculus
nTPM: 44.0
2097 Female, age 72, unknown 45.8
2849 Male, age 72, unknown 44.4
1848 Female, age 42, unknown 44.2
1890 Male, age 53, unknown 41.7
Median raphe nucleus
nTPM: 39.3
2220 Male, age 76, midline 39.3
Periaquaductal grey, anterior
nTPM: 47.5
1795 Male, age 51, unknown 49.1
1947 Male, age 18, unknown 47.9
2502 Female, age 75, unknown 45.6
Periaquaductal grey, dorsal
nTPM: 43.8
2850 Male, age 76, both hemispheres 47.8
1831 Male, age 72, unknown 47.5
1840 Male, age 53, unknown 40.6
2464 Female, age 72, unknown 39.2
Periaquaductal grey, lateral
nTPM: 44.3
2272 Male, age 74, both hemispheres 50.1
2053 Male, age 18, unknown 44.2
2140 Male, age 76, both hemispheres 38.6
Pretectal area
nTPM: 46.6
2273 Male, age 74, both hemispheres 53.9
1816 Male, age 51, unknown 53.0
2224 Female, age 72, unknown 50.9
2667 Female, age 75, unknown 50.0
2007 Male, age 72, unknown 49.3
1817 Female, age 42, unknown 46.9
2825 Male, age 18, unknown 45.8
1944 Female, age 72, unknown 43.1
1815 Male, age 53, unknown 40.7
2407 Male, age 75, both hemispheres 40.0
2316 Male, age 76, right hemisphere 39.3
Red nucleus
nTPM: 48.0
1821 Female, age 72, unknown 56.5
2503 Female, age 72, unknown 53.0
2725 Female, age 75, unknown 52.8
1954 Female, age 42, unknown 52.3
2769 Male, age 72, unknown 51.3
1904 Male, age 53, unknown 49.8
2227 Male, age 72, unknown 49.6
2785 Male, age 18, unknown 47.3
1865 Male, age 51, unknown 43.3
2823 Male, age 76, right hemisphere 42.0
2584 Male, age 75, left hemisphere 41.3
2588 Male, age 74, left hemisphere 37.4
Substantia nigra
nTPM: 41.4
2409 Female, age 72, unknown 48.0
2699 Male, age 18, unknown 46.4
1889 Female, age 72, unknown 46.2
1916 Female, age 42, unknown 45.9
1941 Male, age 53, unknown 45.0
1851 Male, age 51, unknown 41.2
2583 Male, age 75, right hemisphere 38.9
2665 Male, age 74, both hemispheres 37.8
2590 Female, age 75, unknown 35.5
2241 Male, age 72, unknown 28.9
Superior colliculus
nTPM: 45.7
1913 Female, age 42, unknown 49.6
1796 Male, age 53, unknown 48.4
1895 Male, age 76, right hemisphere 47.5
1839 Male, age 51, unknown 47.4
1995 Male, age 72, unknown 46.5
2668 Female, age 75, unknown 45.9
2587 Male, age 74, left hemisphere 45.7
2087 Female, age 72, unknown 42.5
2261 Male, age 18, unknown 42.2
2664 Male, age 75, both hemispheres 41.1
Ventral tegmental area
nTPM: 41.6
2410 Female, age 72, unknown 46.9
2218 Male, age 76, both hemispheres 43.4
1915 Female, age 42, unknown 42.7
2021 Male, age 53, unknown 40.6
1942 Male, age 51, unknown 38.7
2223 Female, age 72, unknown 37.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 81.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.8
Samples: 183

Max nTPM: 169.7
Min nTPM: 33.7
Std nTPM: 24.2
Median nTPM: 77.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 169.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 167.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 161.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 149.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 142.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 140.9
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 138.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 137.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 134.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 130.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 125.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 138.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 135.5
Samples: 4

Max nTPM: 178.8
Min nTPM: 111.8
Sample A Female 178.8
Sample B Female 113.6
Sample C Male 137.8
Sample D Male 111.8
Midbrain
nTPM: 128.9
Samples: 4

Max nTPM: 138.9
Min nTPM: 121.6
Sample A Female 138.9
Sample B Female 123.7
Sample C Male 121.6
Sample D Male 131.5
Periaqueductal gray
nTPM: 116.3
Samples: 3

Max nTPM: 136.7
Min nTPM: 100.1
Sample B Female 112.2
Sample C Male 136.7
Sample D Male 100.1
Superior colliculi
nTPM: 138.5
Samples: 4

Max nTPM: 193.5
Min nTPM: 101.1
Sample A Female 193.5
Sample B Female 101.1
Sample C Male 132.6
Sample D Male 126.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 43.4
Min nTPM: 15.7
Sample A Male 43.4
Sample B Male 22.5
Sample C Female 23.3
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68546107 Antisense, RP_050120_02_A03, Mouse strain C57BL/6J (56 days, male) 0.0

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