MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.4 nTPM
HPA Brain:88.5 nTPM
GTEx:9.4 nTPM
FANTOM5:54.3 Scaled Tags Per Million
Pig:68.3 nTPM
Mouse:8.3 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 88.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.0
1830 Male, age 51, unknown 87.3
2411 Female, age 72, unknown 84.7
1833 Male, age 53, unknown 83.4
1870 Female, age 42, unknown 82.3
2828 Female, age 72, unknown 65.1
2586 Male, age 75, left hemisphere 64.9
2019 Male, age 18, unknown 63.6
2666 Male, age 74, left hemisphere 57.4
1827 Male, age 72, unknown 56.0
2219 Male, age 76, both hemispheres 55.2
Dorsal raphe nucleus
nTPM: 51.8
2750 Male, age 76, both hemispheres 83.8
2016 Female, age 72, unknown 54.7
1828 Male, age 53, unknown 49.9
2047 Male, age 72, unknown 35.9
2298 Female, age 72, unknown 34.6
Inferior colliculus
nTPM: 47.2
1848 Female, age 42, unknown 52.6
2849 Male, age 72, unknown 49.8
1890 Male, age 53, unknown 49.1
2097 Female, age 72, unknown 37.4
Median raphe nucleus
nTPM: 37.5
2220 Male, age 76, midline 37.5
Periaquaductal grey, anterior
nTPM: 49.2
2502 Female, age 75, unknown 56.8
1947 Male, age 18, unknown 49.7
1795 Male, age 51, unknown 41.2
Periaquaductal grey, dorsal
nTPM: 42.8
2464 Female, age 72, unknown 55.1
1831 Male, age 72, unknown 52.9
2850 Male, age 76, both hemispheres 34.0
1840 Male, age 53, unknown 29.2
Periaquaductal grey, lateral
nTPM: 44.3
2053 Male, age 18, unknown 59.9
2272 Male, age 74, both hemispheres 39.1
2140 Male, age 76, both hemispheres 34.0
Pretectal area
nTPM: 48.9
1815 Male, age 53, unknown 66.3
2825 Male, age 18, unknown 60.1
2407 Male, age 75, both hemispheres 59.4
2316 Male, age 76, right hemisphere 59.1
1817 Female, age 42, unknown 50.5
2007 Male, age 72, unknown 48.9
2667 Female, age 75, unknown 45.2
2224 Female, age 72, unknown 43.7
2273 Male, age 74, both hemispheres 38.8
1816 Male, age 51, unknown 34.5
1944 Female, age 72, unknown 31.9
Red nucleus
nTPM: 88.5
2503 Female, age 72, unknown 104.2
1904 Male, age 53, unknown 103.5
1865 Male, age 51, unknown 102.2
2823 Male, age 76, right hemisphere 101.8
1821 Female, age 72, unknown 90.9
2227 Male, age 72, unknown 89.2
2769 Male, age 72, unknown 88.9
2588 Male, age 74, left hemisphere 85.5
1954 Female, age 42, unknown 82.4
2785 Male, age 18, unknown 80.0
2725 Female, age 75, unknown 68.8
2584 Male, age 75, left hemisphere 64.9
Substantia nigra
nTPM: 51.5
2409 Female, age 72, unknown 64.2
2583 Male, age 75, right hemisphere 62.9
1851 Male, age 51, unknown 56.7
2590 Female, age 75, unknown 56.2
1889 Female, age 72, unknown 55.3
2699 Male, age 18, unknown 47.6
1941 Male, age 53, unknown 45.9
2241 Male, age 72, unknown 45.4
2665 Male, age 74, both hemispheres 41.0
1916 Female, age 42, unknown 40.0
Superior colliculus
nTPM: 59.9
1913 Female, age 42, unknown 82.2
1995 Male, age 72, unknown 75.8
1895 Male, age 76, right hemisphere 74.4
1839 Male, age 51, unknown 64.5
2587 Male, age 74, left hemisphere 63.0
2668 Female, age 75, unknown 61.0
1796 Male, age 53, unknown 48.0
2664 Male, age 75, both hemispheres 47.5
2261 Male, age 18, unknown 41.4
2087 Female, age 72, unknown 40.8
Ventral tegmental area
nTPM: 54.3
2410 Female, age 72, unknown 78.9
2223 Female, age 72, unknown 57.0
1915 Female, age 42, unknown 47.7
2021 Male, age 53, unknown 47.7
1942 Male, age 51, unknown 47.6
2218 Male, age 76, both hemispheres 46.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.4
Samples: 183

Max nTPM: 36.3
Min nTPM: 2.0
Std nTPM: 5.5
Median nTPM: 8.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 36.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 30.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 28.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 24.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 24.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 22.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 21.9
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 21.5
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 21.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 20.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 20.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 54.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.3
FF:10158-103A5 76 years, female 54.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.3
Samples: 4

Max nTPM: 100.8
Min nTPM: 53.4
Sample A Female 62.2
Sample B Female 53.4
Sample C Male 56.8
Sample D Male 100.8
Midbrain
nTPM: 63.8
Samples: 4

Max nTPM: 105.1
Min nTPM: 41.4
Sample A Female 105.1
Sample B Female 64.0
Sample C Male 41.4
Sample D Male 44.7
Periaqueductal gray
nTPM: 58.3
Samples: 3

Max nTPM: 63.0
Min nTPM: 50.5
Sample B Female 63.0
Sample C Male 50.5
Sample D Male 61.5
Superior colliculi
nTPM: 50.4
Samples: 4

Max nTPM: 59.7
Min nTPM: 33.4
Sample A Female 54.3
Sample B Female 33.4
Sample C Male 54.0
Sample D Male 59.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.3
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.9
Sample A Male 7.9
Sample B Male 8.4
Sample C Female 8.5
Sample D Female 8.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69446298 Antisense, RP_050419_01_C12, Mouse strain C57BL/6J (56 days, male) 0.1

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