MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.7 nTPM
HPA Brain:32.9 nTPM
GTEx:49.7 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:29.2 nTPM
Mouse:9.3 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.6
2219 Male, age 76, both hemispheres 26.1
2586 Male, age 75, left hemisphere 22.7
1827 Male, age 72, unknown 22.3
2828 Female, age 72, unknown 22.0
1870 Female, age 42, unknown 21.9
1833 Male, age 53, unknown 19.0
2666 Male, age 74, left hemisphere 18.6
1830 Male, age 51, unknown 18.1
2411 Female, age 72, unknown 17.8
2019 Male, age 18, unknown 17.3
Dorsal raphe nucleus
nTPM: 21.7
2298 Female, age 72, unknown 25.2
2750 Male, age 76, both hemispheres 22.5
1828 Male, age 53, unknown 21.4
2047 Male, age 72, unknown 21.2
2016 Female, age 72, unknown 18.1
Inferior colliculus
nTPM: 22.0
2849 Male, age 72, unknown 24.8
2097 Female, age 72, unknown 23.4
1890 Male, age 53, unknown 20.7
1848 Female, age 42, unknown 19.0
Median raphe nucleus
nTPM: 32.9
2220 Male, age 76, midline 32.9
Periaquaductal grey, anterior
nTPM: 23.6
1795 Male, age 51, unknown 25.8
2502 Female, age 75, unknown 23.2
1947 Male, age 18, unknown 22.0
Periaquaductal grey, dorsal
nTPM: 20.7
2850 Male, age 76, both hemispheres 27.5
1840 Male, age 53, unknown 21.2
2464 Female, age 72, unknown 17.5
1831 Male, age 72, unknown 16.6
Periaquaductal grey, lateral
nTPM: 21.5
2140 Male, age 76, both hemispheres 24.8
2272 Male, age 74, both hemispheres 22.1
2053 Male, age 18, unknown 17.6
Pretectal area
nTPM: 22.2
2667 Female, age 75, unknown 24.4
2007 Male, age 72, unknown 24.3
2224 Female, age 72, unknown 24.1
1816 Male, age 51, unknown 23.4
1817 Female, age 42, unknown 23.1
2825 Male, age 18, unknown 22.3
2273 Male, age 74, both hemispheres 22.1
1944 Female, age 72, unknown 21.7
1815 Male, age 53, unknown 20.3
2316 Male, age 76, right hemisphere 19.2
2407 Male, age 75, both hemispheres 19.1
Red nucleus
nTPM: 22.2
2725 Female, age 75, unknown 24.9
2227 Male, age 72, unknown 24.7
2503 Female, age 72, unknown 24.5
2769 Male, age 72, unknown 24.0
1954 Female, age 42, unknown 23.3
2785 Male, age 18, unknown 23.0
1865 Male, age 51, unknown 21.7
2588 Male, age 74, left hemisphere 21.2
1904 Male, age 53, unknown 20.8
2584 Male, age 75, left hemisphere 19.5
1821 Female, age 72, unknown 19.2
2823 Male, age 76, right hemisphere 19.2
Substantia nigra
nTPM: 22.1
1916 Female, age 42, unknown 34.9
2699 Male, age 18, unknown 26.3
1941 Male, age 53, unknown 23.4
1851 Male, age 51, unknown 23.0
1889 Female, age 72, unknown 22.3
2665 Male, age 74, both hemispheres 21.4
2241 Male, age 72, unknown 19.5
2583 Male, age 75, right hemisphere 17.9
2409 Female, age 72, unknown 16.6
2590 Female, age 75, unknown 16.0
Superior colliculus
nTPM: 20.0
1796 Male, age 53, unknown 26.6
2261 Male, age 18, unknown 23.6
2668 Female, age 75, unknown 21.8
2087 Female, age 72, unknown 21.5
1913 Female, age 42, unknown 19.1
1839 Male, age 51, unknown 18.5
2587 Male, age 74, left hemisphere 18.2
2664 Male, age 75, both hemispheres 17.6
1895 Male, age 76, right hemisphere 16.8
1995 Male, age 72, unknown 16.3
Ventral tegmental area
nTPM: 23.1
2218 Male, age 76, both hemispheres 27.3
1915 Female, age 42, unknown 24.8
2223 Female, age 72, unknown 24.8
1942 Male, age 51, unknown 23.0
2021 Male, age 53, unknown 19.9
2410 Female, age 72, unknown 19.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 49.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.7
Samples: 183

Max nTPM: 101.9
Min nTPM: 19.3
Std nTPM: 13.6
Median nTPM: 49.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 101.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 96.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 87.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 82.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 79.6
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 75.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 75.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 75.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 74.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 72.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 72.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.5
FF:10158-103A5 76 years, female 72.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.6
Samples: 4

Max nTPM: 35.3
Min nTPM: 18.9
Sample A Female 35.3
Sample B Female 18.9
Sample C Male 27.9
Sample D Male 20.2
Midbrain
nTPM: 27.7
Samples: 4

Max nTPM: 28.7
Min nTPM: 26.1
Sample A Female 27.9
Sample B Female 26.1
Sample C Male 28.2
Sample D Male 28.7
Periaqueductal gray
nTPM: 22.7
Samples: 3

Max nTPM: 27.0
Min nTPM: 18.6
Sample B Female 18.6
Sample C Male 27.0
Sample D Male 22.6
Superior colliculi
nTPM: 29.2
Samples: 4

Max nTPM: 35.1
Min nTPM: 21.0
Sample A Female 35.1
Sample B Female 21.0
Sample C Male 30.6
Sample D Male 29.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.1
Sample A Male 10.8
Sample B Male 9.0
Sample C Female 9.2
Sample D Female 8.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
70545913 Antisense, RP_050623_03_B10, Mouse strain C57BL/6J (56 days, male) 2.3

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