MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.8 nTPM
HPA Brain:142.7 nTPM
GTEx:58.8 nTPM
FANTOM5:151.7 Scaled Tags Per Million
Pig:71.5 nTPM
Mouse:38.2 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 142.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.4
2411 Female, age 72, unknown 137.7
2019 Male, age 18, unknown 130.8
2586 Male, age 75, left hemisphere 123.1
1833 Male, age 53, unknown 122.1
1830 Male, age 51, unknown 117.6
1870 Female, age 42, unknown 107.5
2828 Female, age 72, unknown 101.3
2219 Male, age 76, both hemispheres 94.5
2666 Male, age 74, left hemisphere 94.5
1827 Male, age 72, unknown 84.7
Dorsal raphe nucleus
nTPM: 89.6
2750 Male, age 76, both hemispheres 161.4
1828 Male, age 53, unknown 85.4
2047 Male, age 72, unknown 69.1
2298 Female, age 72, unknown 66.1
2016 Female, age 72, unknown 65.9
Inferior colliculus
nTPM: 71.3
1890 Male, age 53, unknown 77.2
2097 Female, age 72, unknown 70.9
1848 Female, age 42, unknown 69.7
2849 Male, age 72, unknown 67.2
Median raphe nucleus
nTPM: 97.5
2220 Male, age 76, midline 97.5
Periaquaductal grey, anterior
nTPM: 72.4
1795 Male, age 51, unknown 81.7
1947 Male, age 18, unknown 79.7
2502 Female, age 75, unknown 55.8
Periaquaductal grey, dorsal
nTPM: 54.0
2464 Female, age 72, unknown 77.2
1831 Male, age 72, unknown 65.4
1840 Male, age 53, unknown 41.2
2850 Male, age 76, both hemispheres 32.1
Periaquaductal grey, lateral
nTPM: 62.9
2272 Male, age 74, both hemispheres 87.1
2053 Male, age 18, unknown 64.5
2140 Male, age 76, both hemispheres 37.3
Pretectal area
nTPM: 86.9
2007 Male, age 72, unknown 115.1
1815 Male, age 53, unknown 107.8
2407 Male, age 75, both hemispheres 107.8
1817 Female, age 42, unknown 97.6
2316 Male, age 76, right hemisphere 87.8
1816 Male, age 51, unknown 83.4
1944 Female, age 72, unknown 83.3
2825 Male, age 18, unknown 74.1
2273 Male, age 74, both hemispheres 72.3
2224 Female, age 72, unknown 64.6
2667 Female, age 75, unknown 62.3
Red nucleus
nTPM: 142.7
2823 Male, age 76, right hemisphere 162.0
2584 Male, age 75, left hemisphere 156.1
1904 Male, age 53, unknown 155.2
2725 Female, age 75, unknown 149.6
2785 Male, age 18, unknown 147.9
2227 Male, age 72, unknown 146.0
2588 Male, age 74, left hemisphere 144.0
2769 Male, age 72, unknown 143.1
1865 Male, age 51, unknown 137.1
2503 Female, age 72, unknown 129.4
1821 Female, age 72, unknown 122.1
1954 Female, age 42, unknown 119.8
Substantia nigra
nTPM: 93.4
2583 Male, age 75, right hemisphere 142.3
2590 Female, age 75, unknown 115.5
1851 Male, age 51, unknown 101.7
1916 Female, age 42, unknown 99.5
1889 Female, age 72, unknown 96.0
1941 Male, age 53, unknown 86.6
2409 Female, age 72, unknown 78.8
2699 Male, age 18, unknown 73.5
2241 Male, age 72, unknown 70.4
2665 Male, age 74, both hemispheres 69.9
Superior colliculus
nTPM: 98.6
2668 Female, age 75, unknown 127.3
1995 Male, age 72, unknown 117.6
1913 Female, age 42, unknown 117.1
2587 Male, age 74, left hemisphere 100.6
1796 Male, age 53, unknown 92.7
2261 Male, age 18, unknown 92.7
1895 Male, age 76, right hemisphere 90.5
1839 Male, age 51, unknown 87.4
2087 Female, age 72, unknown 86.2
2664 Male, age 75, both hemispheres 74.3
Ventral tegmental area
nTPM: 106.4
2223 Female, age 72, unknown 152.0
2410 Female, age 72, unknown 119.5
2218 Male, age 76, both hemispheres 108.9
1942 Male, age 51, unknown 89.8
1915 Female, age 42, unknown 84.2
2021 Male, age 53, unknown 83.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.8
Samples: 183

Max nTPM: 296.8
Min nTPM: 5.8
Std nTPM: 39.9
Median nTPM: 49.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 296.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 255.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 192.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 187.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 184.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 165.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 146.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 137.9
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 136.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 134.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 125.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 151.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 151.7
FF:10158-103A5 76 years, female 151.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 71.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.7
Samples: 4

Max nTPM: 86.4
Min nTPM: 35.8
Sample A Female 86.4
Sample B Female 35.8
Sample C Male 55.1
Sample D Male 61.5
Midbrain
nTPM: 71.6
Samples: 4

Max nTPM: 112.2
Min nTPM: 48.4
Sample A Female 112.2
Sample B Female 49.1
Sample C Male 76.5
Sample D Male 48.4
Periaqueductal gray
nTPM: 39.2
Samples: 3

Max nTPM: 44.0
Min nTPM: 35.8
Sample B Female 44.0
Sample C Male 35.8
Sample D Male 37.7
Superior colliculi
nTPM: 55.7
Samples: 4

Max nTPM: 78.4
Min nTPM: 22.7
Sample A Female 78.4
Sample B Female 22.7
Sample C Male 61.0
Sample D Male 60.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 39.6
Min nTPM: 36.3
Sample A Male 38.2
Sample B Male 36.3
Sample C Female 39.6
Sample D Female 38.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
69527722 Antisense, RP_050421_02_C04, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo