MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.8 nTPM
HPA Brain:206.2 nTPM
GTEx:43.8 nTPM
FANTOM5:106.6 Scaled Tags Per Million
Pig:79.5 nTPM
Mouse:81.5 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 206.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 185.2
2666 Male, age 74, left hemisphere 211.0
2586 Male, age 75, left hemisphere 199.6
2219 Male, age 76, both hemispheres 198.1
1833 Male, age 53, unknown 191.5
1870 Female, age 42, unknown 186.6
2019 Male, age 18, unknown 177.1
1827 Male, age 72, unknown 174.5
1830 Male, age 51, unknown 174.2
2411 Female, age 72, unknown 172.3
2828 Female, age 72, unknown 166.6
Dorsal raphe nucleus
nTPM: 180.3
2016 Female, age 72, unknown 202.6
2047 Male, age 72, unknown 184.5
1828 Male, age 53, unknown 182.2
2750 Male, age 76, both hemispheres 175.1
2298 Female, age 72, unknown 157.2
Inferior colliculus
nTPM: 179.9
2849 Male, age 72, unknown 191.9
1890 Male, age 53, unknown 188.2
1848 Female, age 42, unknown 180.0
2097 Female, age 72, unknown 159.6
Median raphe nucleus
nTPM: 168.5
2220 Male, age 76, midline 168.5
Periaquaductal grey, anterior
nTPM: 186.5
2502 Female, age 75, unknown 201.4
1947 Male, age 18, unknown 188.2
1795 Male, age 51, unknown 169.9
Periaquaductal grey, dorsal
nTPM: 190.0
1831 Male, age 72, unknown 194.0
1840 Male, age 53, unknown 193.2
2850 Male, age 76, both hemispheres 192.4
2464 Female, age 72, unknown 180.3
Periaquaductal grey, lateral
nTPM: 181.1
2272 Male, age 74, both hemispheres 182.2
2140 Male, age 76, both hemispheres 181.5
2053 Male, age 18, unknown 179.5
Pretectal area
nTPM: 179.1
1944 Female, age 72, unknown 192.8
2407 Male, age 75, both hemispheres 189.6
2825 Male, age 18, unknown 188.5
1816 Male, age 51, unknown 188.1
1815 Male, age 53, unknown 186.8
2273 Male, age 74, both hemispheres 178.6
1817 Female, age 42, unknown 173.2
2224 Female, age 72, unknown 172.4
2316 Male, age 76, right hemisphere 172.1
2007 Male, age 72, unknown 165.1
2667 Female, age 75, unknown 162.8
Red nucleus
nTPM: 195.3
1821 Female, age 72, unknown 212.4
1904 Male, age 53, unknown 209.4
2503 Female, age 72, unknown 202.6
2823 Male, age 76, right hemisphere 201.6
2588 Male, age 74, left hemisphere 198.3
1865 Male, age 51, unknown 197.8
1954 Female, age 42, unknown 195.6
2725 Female, age 75, unknown 193.2
2584 Male, age 75, left hemisphere 189.5
2227 Male, age 72, unknown 188.2
2769 Male, age 72, unknown 178.8
2785 Male, age 18, unknown 176.4
Substantia nigra
nTPM: 206.2
2699 Male, age 18, unknown 236.5
2241 Male, age 72, unknown 224.7
2409 Female, age 72, unknown 221.7
1851 Male, age 51, unknown 218.6
1916 Female, age 42, unknown 216.5
2583 Male, age 75, right hemisphere 199.1
2590 Female, age 75, unknown 196.9
2665 Male, age 74, both hemispheres 187.5
1889 Female, age 72, unknown 184.5
1941 Male, age 53, unknown 175.8
Superior colliculus
nTPM: 182.4
2668 Female, age 75, unknown 194.5
1913 Female, age 42, unknown 194.2
1995 Male, age 72, unknown 192.1
2664 Male, age 75, both hemispheres 190.2
2587 Male, age 74, left hemisphere 188.6
1895 Male, age 76, right hemisphere 180.9
1839 Male, age 51, unknown 174.9
2261 Male, age 18, unknown 172.3
2087 Female, age 72, unknown 168.6
1796 Male, age 53, unknown 167.5
Ventral tegmental area
nTPM: 184.1
1942 Male, age 51, unknown 195.6
1915 Female, age 42, unknown 193.5
2021 Male, age 53, unknown 185.5
2410 Female, age 72, unknown 184.1
2218 Male, age 76, both hemispheres 173.2
2223 Female, age 72, unknown 172.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.8
Samples: 183

Max nTPM: 137.9
Min nTPM: 0.3
Std nTPM: 27.2
Median nTPM: 40.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 137.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 132.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 108.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 108.0
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 106.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 101.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 100.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 99.8
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 93.5
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 93.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 92.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 106.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 106.6
FF:10158-103A5 76 years, female 106.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 79.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 78.4
Samples: 4

Max nTPM: 90.0
Min nTPM: 66.0
Sample A Female 78.0
Sample B Female 66.0
Sample C Male 90.0
Sample D Male 79.5
Midbrain
nTPM: 79.5
Samples: 4

Max nTPM: 82.0
Min nTPM: 73.1
Sample A Female 81.0
Sample B Female 82.0
Sample C Male 81.8
Sample D Male 73.1
Periaqueductal gray
nTPM: 68.0
Samples: 3

Max nTPM: 72.3
Min nTPM: 60.1
Sample B Female 72.3
Sample C Male 71.6
Sample D Male 60.1
Superior colliculi
nTPM: 69.6
Samples: 4

Max nTPM: 82.3
Min nTPM: 50.6
Sample A Female 68.6
Sample B Female 50.6
Sample C Male 82.3
Sample D Male 77.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 81.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.5
Samples: 4

Max nTPM: 88.3
Min nTPM: 75.3
Sample A Male 75.3
Sample B Male 79.7
Sample C Female 88.3
Sample D Female 82.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
77620471 Antisense, RP_070129_03_E01, Mouse strain C57BL/6J (56 days, male) 0.1

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