MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.1 nTPM
HPA Brain:1.4 nTPM
GTEx:0.1 nTPM
FANTOM5:0.3 Scaled Tags Per Million
Pig:1.1 nTPM
Mouse:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 0.3
1827 Male, age 72, unknown 0.4
1830 Male, age 51, unknown 0.4
2019 Male, age 18, unknown 0.4
2219 Male, age 76, both hemispheres 0.4
2666 Male, age 74, left hemisphere 0.4
1833 Male, age 53, unknown 0.3
1870 Female, age 42, unknown 0.3
2586 Male, age 75, left hemisphere 0.3
2828 Female, age 72, unknown 0.3
2411 Female, age 72, unknown 0.2
Dorsal raphe nucleus
nTPM: 0.7
2298 Female, age 72, unknown 1.3
2016 Female, age 72, unknown 1.0
1828 Male, age 53, unknown 0.6
2750 Male, age 76, both hemispheres 0.4
2047 Male, age 72, unknown 0.3
Inferior colliculus
nTPM: 0.3
1890 Male, age 53, unknown 0.4
2097 Female, age 72, unknown 0.4
2849 Male, age 72, unknown 0.3
1848 Female, age 42, unknown 0.2
Median raphe nucleus
nTPM: 0.2
2220 Male, age 76, midline 0.2
Periaquaductal grey, anterior
nTPM: 0.7
1795 Male, age 51, unknown 1.1
1947 Male, age 18, unknown 0.6
2502 Female, age 75, unknown 0.5
Periaquaductal grey, dorsal
nTPM: 0.7
1840 Male, age 53, unknown 1.0
2850 Male, age 76, both hemispheres 0.8
1831 Male, age 72, unknown 0.7
2464 Female, age 72, unknown 0.5
Periaquaductal grey, lateral
nTPM: 1.4
2272 Male, age 74, both hemispheres 2.4
2140 Male, age 76, both hemispheres 1.0
2053 Male, age 18, unknown 0.7
Pretectal area
nTPM: 0.6
2273 Male, age 74, both hemispheres 1.7
2224 Female, age 72, unknown 0.9
2007 Male, age 72, unknown 0.6
2825 Male, age 18, unknown 0.6
2407 Male, age 75, both hemispheres 0.5
1816 Male, age 51, unknown 0.4
1815 Male, age 53, unknown 0.3
1817 Female, age 42, unknown 0.3
2316 Male, age 76, right hemisphere 0.3
1944 Female, age 72, unknown 0.2
2667 Female, age 75, unknown 0.2
Red nucleus
nTPM: 0.3
2725 Female, age 75, unknown 0.5
2503 Female, age 72, unknown 0.4
2769 Male, age 72, unknown 0.4
2785 Male, age 18, unknown 0.4
1904 Male, age 53, unknown 0.3
1954 Female, age 42, unknown 0.3
2227 Male, age 72, unknown 0.3
2584 Male, age 75, left hemisphere 0.3
2823 Male, age 76, right hemisphere 0.3
1865 Male, age 51, unknown 0.2
1821 Female, age 72, unknown 0.1
2588 Male, age 74, left hemisphere 0.0
Substantia nigra
nTPM: 0.3
2590 Female, age 75, unknown 0.7
2699 Male, age 18, unknown 0.6
2665 Male, age 74, both hemispheres 0.5
2409 Female, age 72, unknown 0.3
2583 Male, age 75, right hemisphere 0.3
1851 Male, age 51, unknown 0.2
1889 Female, age 72, unknown 0.2
1916 Female, age 42, unknown 0.2
1941 Male, age 53, unknown 0.2
2241 Male, age 72, unknown 0.2
Superior colliculus
nTPM: 0.5
1995 Male, age 72, unknown 0.9
2664 Male, age 75, both hemispheres 0.9
2587 Male, age 74, left hemisphere 0.6
1796 Male, age 53, unknown 0.5
1839 Male, age 51, unknown 0.5
2261 Male, age 18, unknown 0.4
2668 Female, age 75, unknown 0.4
1913 Female, age 42, unknown 0.3
2087 Female, age 72, unknown 0.3
1895 Male, age 76, right hemisphere 0.1
Ventral tegmental area
nTPM: 0.4
2021 Male, age 53, unknown 0.6
1915 Female, age 42, unknown 0.4
2218 Male, age 76, both hemispheres 0.4
1942 Male, age 51, unknown 0.3
2223 Female, age 72, unknown 0.3
2410 Female, age 72, unknown 0.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 0.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.1
Samples: 183

Max nTPM: 0.6
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 0.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 0.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 0.5
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 0.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 0.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 0.5
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 0.4
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 0.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 0.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 0.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 0.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.3
FF:10158-103A5 76 years, female 0.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.2
Sample C Male 0.1
Sample D Male 0.2
Midbrain
nTPM: 1.1
Samples: 4

Max nTPM: 3.4
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.3
Sample C Male 3.4
Sample D Male 0.7
Periaqueductal gray
nTPM: 0.3
Samples: 3

Max nTPM: 0.4
Min nTPM: 0.2
Sample B Female 0.3
Sample C Male 0.2
Sample D Male 0.4
Superior colliculi
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Female 0.8
Sample B Female 0.4
Sample C Male 0.4
Sample D Male 0.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo