MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:172.7 nTPM
HPA Brain:85.9 nTPM
GTEx:172.7 nTPM
FANTOM5:147.3 Scaled Tags Per Million
Pig:93.6 nTPM
Mouse:73.9 nTPM
Allen mouse:2.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 85.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.7
2586 Male, age 75, left hemisphere 78.9
2411 Female, age 72, unknown 77.7
1870 Female, age 42, unknown 77.2
2828 Female, age 72, unknown 74.7
1833 Male, age 53, unknown 66.4
2019 Male, age 18, unknown 66.3
1827 Male, age 72, unknown 64.1
1830 Male, age 51, unknown 62.0
2219 Male, age 76, both hemispheres 55.5
2666 Male, age 74, left hemisphere 54.4
Dorsal raphe nucleus
nTPM: 79.3
2298 Female, age 72, unknown 102.6
2016 Female, age 72, unknown 74.7
2750 Male, age 76, both hemispheres 74.5
1828 Male, age 53, unknown 72.8
2047 Male, age 72, unknown 71.8
Inferior colliculus
nTPM: 62.4
2097 Female, age 72, unknown 75.6
1890 Male, age 53, unknown 61.5
1848 Female, age 42, unknown 56.4
2849 Male, age 72, unknown 56.1
Median raphe nucleus
nTPM: 72.3
2220 Male, age 76, midline 72.3
Periaquaductal grey, anterior
nTPM: 85.9
1947 Male, age 18, unknown 93.0
1795 Male, age 51, unknown 84.0
2502 Female, age 75, unknown 80.7
Periaquaductal grey, dorsal
nTPM: 66.4
1840 Male, age 53, unknown 75.4
2850 Male, age 76, both hemispheres 67.4
1831 Male, age 72, unknown 62.7
2464 Female, age 72, unknown 60.2
Periaquaductal grey, lateral
nTPM: 72.9
2272 Male, age 74, both hemispheres 85.3
2053 Male, age 18, unknown 69.0
2140 Male, age 76, both hemispheres 64.6
Pretectal area
nTPM: 73.7
2273 Male, age 74, both hemispheres 96.2
2224 Female, age 72, unknown 87.4
1817 Female, age 42, unknown 78.0
2007 Male, age 72, unknown 75.2
2667 Female, age 75, unknown 74.3
1815 Male, age 53, unknown 73.0
2825 Male, age 18, unknown 69.5
1816 Male, age 51, unknown 69.3
2407 Male, age 75, both hemispheres 67.1
1944 Female, age 72, unknown 63.1
2316 Male, age 76, right hemisphere 57.3
Red nucleus
nTPM: 68.8
2503 Female, age 72, unknown 77.5
1865 Male, age 51, unknown 77.0
2725 Female, age 75, unknown 76.5
2769 Male, age 72, unknown 72.4
2227 Male, age 72, unknown 72.2
1821 Female, age 72, unknown 71.8
1904 Male, age 53, unknown 71.2
1954 Female, age 42, unknown 68.4
2785 Male, age 18, unknown 66.8
2823 Male, age 76, right hemisphere 61.5
2584 Male, age 75, left hemisphere 60.7
2588 Male, age 74, left hemisphere 49.1
Substantia nigra
nTPM: 72.1
1916 Female, age 42, unknown 93.8
1851 Male, age 51, unknown 87.1
2409 Female, age 72, unknown 78.8
2241 Male, age 72, unknown 74.7
2699 Male, age 18, unknown 67.4
2583 Male, age 75, right hemisphere 66.8
1889 Female, age 72, unknown 66.6
2590 Female, age 75, unknown 64.7
2665 Male, age 74, both hemispheres 63.6
1941 Male, age 53, unknown 57.3
Superior colliculus
nTPM: 69.2
2587 Male, age 74, left hemisphere 80.2
2261 Male, age 18, unknown 76.4
1913 Female, age 42, unknown 76.0
1995 Male, age 72, unknown 75.7
1796 Male, age 53, unknown 74.9
2668 Female, age 75, unknown 70.4
2087 Female, age 72, unknown 64.8
2664 Male, age 75, both hemispheres 64.2
1839 Male, age 51, unknown 56.2
1895 Male, age 76, right hemisphere 53.0
Ventral tegmental area
nTPM: 77.8
1915 Female, age 42, unknown 82.7
2021 Male, age 53, unknown 81.7
2410 Female, age 72, unknown 81.5
1942 Male, age 51, unknown 80.0
2223 Female, age 72, unknown 72.2
2218 Male, age 76, both hemispheres 68.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 172.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 172.7
Samples: 183

Max nTPM: 401.3
Min nTPM: 81.1
Std nTPM: 50.7
Median nTPM: 161.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 401.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 305.7
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 299.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 295.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 294.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 283.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 282.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 273.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 271.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 265.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 262.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 147.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.3
FF:10158-103A5 76 years, female 147.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 93.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.6
Samples: 4

Max nTPM: 123.4
Min nTPM: 75.2
Sample A Female 123.4
Sample B Female 97.6
Sample C Male 78.2
Sample D Male 75.2
Midbrain
nTPM: 88.7
Samples: 4

Max nTPM: 146.0
Min nTPM: 50.6
Sample A Female 146.0
Sample B Female 85.5
Sample C Male 72.6
Sample D Male 50.6
Periaqueductal gray
nTPM: 62.2
Samples: 3

Max nTPM: 65.8
Min nTPM: 59.1
Sample B Female 61.8
Sample C Male 65.8
Sample D Male 59.1
Superior colliculi
nTPM: 90.1
Samples: 4

Max nTPM: 115.0
Min nTPM: 66.4
Sample A Female 105.7
Sample B Female 115.0
Sample C Male 73.3
Sample D Male 66.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 73.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.9
Samples: 4

Max nTPM: 79.2
Min nTPM: 69.1
Sample A Male 76.4
Sample B Male 70.7
Sample C Female 69.1
Sample D Female 79.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69885768 Antisense, RP_050512_03_D07, Mouse strain C57BL/6J (56 days, male) 2.6

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