MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.2 nTPM
HPA Brain:38.1 nTPM
GTEx:56.2 nTPM
FANTOM5:79.3 Scaled Tags Per Million
Pig:50.3 nTPM
Mouse:74.5 nTPM
Allen mouse:2.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.5
2019 Male, age 18, unknown 38.9
1870 Female, age 42, unknown 36.2
2411 Female, age 72, unknown 35.1
1827 Male, age 72, unknown 34.9
1833 Male, age 53, unknown 34.3
2666 Male, age 74, left hemisphere 34.0
1830 Male, age 51, unknown 32.6
2219 Male, age 76, both hemispheres 32.3
2586 Male, age 75, left hemisphere 30.1
2828 Female, age 72, unknown 26.8
Dorsal raphe nucleus
nTPM: 32.0
2298 Female, age 72, unknown 35.9
2750 Male, age 76, both hemispheres 33.5
1828 Male, age 53, unknown 33.1
2016 Female, age 72, unknown 30.1
2047 Male, age 72, unknown 27.4
Inferior colliculus
nTPM: 35.9
2097 Female, age 72, unknown 41.4
1890 Male, age 53, unknown 35.7
1848 Female, age 42, unknown 33.4
2849 Male, age 72, unknown 33.2
Median raphe nucleus
nTPM: 36.9
2220 Male, age 76, midline 36.9
Periaquaductal grey, anterior
nTPM: 34.6
1947 Male, age 18, unknown 36.0
2502 Female, age 75, unknown 34.3
1795 Male, age 51, unknown 33.5
Periaquaductal grey, dorsal
nTPM: 33.8
2850 Male, age 76, both hemispheres 38.3
1831 Male, age 72, unknown 34.8
2464 Female, age 72, unknown 31.6
1840 Male, age 53, unknown 30.4
Periaquaductal grey, lateral
nTPM: 31.0
2272 Male, age 74, both hemispheres 32.9
2053 Male, age 18, unknown 30.8
2140 Male, age 76, both hemispheres 29.4
Pretectal area
nTPM: 38.1
1817 Female, age 42, unknown 47.6
2007 Male, age 72, unknown 46.0
1944 Female, age 72, unknown 43.7
1815 Male, age 53, unknown 43.0
1816 Male, age 51, unknown 42.8
2667 Female, age 75, unknown 35.0
2224 Female, age 72, unknown 34.7
2273 Male, age 74, both hemispheres 34.7
2407 Male, age 75, both hemispheres 32.6
2825 Male, age 18, unknown 30.6
2316 Male, age 76, right hemisphere 28.6
Red nucleus
nTPM: 34.9
1821 Female, age 72, unknown 40.3
2785 Male, age 18, unknown 39.2
2725 Female, age 75, unknown 37.9
2503 Female, age 72, unknown 36.7
1954 Female, age 42, unknown 36.5
2588 Male, age 74, left hemisphere 35.9
1865 Male, age 51, unknown 35.6
2823 Male, age 76, right hemisphere 34.0
1904 Male, age 53, unknown 33.1
2227 Male, age 72, unknown 31.3
2769 Male, age 72, unknown 30.1
2584 Male, age 75, left hemisphere 28.2
Substantia nigra
nTPM: 35.6
2241 Male, age 72, unknown 42.7
1889 Female, age 72, unknown 42.5
1941 Male, age 53, unknown 39.1
2409 Female, age 72, unknown 37.6
2590 Female, age 75, unknown 35.6
1916 Female, age 42, unknown 35.5
1851 Male, age 51, unknown 33.7
2665 Male, age 74, both hemispheres 31.0
2699 Male, age 18, unknown 30.2
2583 Male, age 75, right hemisphere 28.3
Superior colliculus
nTPM: 33.9
2587 Male, age 74, left hemisphere 40.0
2087 Female, age 72, unknown 37.6
2261 Male, age 18, unknown 35.7
1995 Male, age 72, unknown 33.8
1913 Female, age 42, unknown 33.7
1796 Male, age 53, unknown 33.4
2668 Female, age 75, unknown 33.3
1839 Male, age 51, unknown 32.7
1895 Male, age 76, right hemisphere 31.6
2664 Male, age 75, both hemispheres 27.7
Ventral tegmental area
nTPM: 33.5
2223 Female, age 72, unknown 37.9
2410 Female, age 72, unknown 34.8
1915 Female, age 42, unknown 33.6
1942 Male, age 51, unknown 32.7
2218 Male, age 76, both hemispheres 32.6
2021 Male, age 53, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 56.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.2
Samples: 183

Max nTPM: 107.0
Min nTPM: 36.1
Std nTPM: 9.6
Median nTPM: 55.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 107.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 90.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 84.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 76.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 74.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 74.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 73.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 72.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 71.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 71.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 71.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 79.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.3
FF:10158-103A5 76 years, female 79.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 50.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.9
Samples: 4

Max nTPM: 62.9
Min nTPM: 30.6
Sample A Female 62.9
Sample B Female 41.4
Sample C Male 40.6
Sample D Male 30.6
Midbrain
nTPM: 50.3
Samples: 4

Max nTPM: 60.7
Min nTPM: 44.9
Sample A Female 60.7
Sample B Female 44.9
Sample C Male 49.2
Sample D Male 46.3
Periaqueductal gray
nTPM: 37.4
Samples: 3

Max nTPM: 40.3
Min nTPM: 34.6
Sample B Female 37.3
Sample C Male 40.3
Sample D Male 34.6
Superior colliculi
nTPM: 48.8
Samples: 4

Max nTPM: 62.1
Min nTPM: 39.9
Sample A Female 62.1
Sample B Female 39.9
Sample C Male 52.9
Sample D Male 40.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 74.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.5
Samples: 4

Max nTPM: 79.7
Min nTPM: 70.2
Sample A Male 76.6
Sample B Male 79.7
Sample C Female 71.5
Sample D Female 70.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
67767474 Antisense, RP_040916_02_C02, Mouse strain C57BL/6J (56 days, male) 2.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo