BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.3 nTPM
HPA Brain:234.0 nTPM
GTEx:51.3 nTPM
FANTOM5:309.1 Scaled Tags Per Million
Mouse:143.3 nTPM
Rat:115.3 nTPM
Pig:37.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 234.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 194.2
2586 Male, age 75, left hemisphere 271.0
2411 Female, age 72, unknown 218.7
2019 Male, age 18, unknown 218.3
1830 Male, age 51, unknown 211.4
1833 Male, age 53, unknown 197.8
1870 Female, age 42, unknown 182.1
2828 Female, age 72, unknown 176.9
2666 Male, age 74, left hemisphere 172.8
1827 Male, age 72, unknown 151.2
2219 Male, age 76, both hemispheres 142.0
Dorsal raphe nucleus
nTPM: 141.4
2750 Male, age 76, both hemispheres 227.9
1828 Male, age 53, unknown 136.9
2016 Female, age 72, unknown 127.3
2047 Male, age 72, unknown 110.3
2298 Female, age 72, unknown 104.7
Inferior colliculus
nTPM: 130.7
1890 Male, age 53, unknown 137.4
2849 Male, age 72, unknown 132.5
1848 Female, age 42, unknown 128.5
2097 Female, age 72, unknown 124.4
Median raphe nucleus
nTPM: 119.0
2220 Male, age 76, midline 119.0
Periaquaductal grey, anterior
nTPM: 161.7
1947 Male, age 18, unknown 171.2
2502 Female, age 75, unknown 168.7
1795 Male, age 51, unknown 145.1
Periaquaductal grey, dorsal
nTPM: 99.9
2464 Female, age 72, unknown 159.1
1831 Male, age 72, unknown 99.8
1840 Male, age 53, unknown 83.0
2850 Male, age 76, both hemispheres 57.7
Periaquaductal grey, lateral
nTPM: 115.4
2272 Male, age 74, both hemispheres 139.9
2053 Male, age 18, unknown 125.1
2140 Male, age 76, both hemispheres 81.2
Pretectal area
nTPM: 148.6
2316 Male, age 76, right hemisphere 223.2
2407 Male, age 75, both hemispheres 209.2
2007 Male, age 72, unknown 172.1
1815 Male, age 53, unknown 166.8
2825 Male, age 18, unknown 142.8
1817 Female, age 42, unknown 134.7
2667 Female, age 75, unknown 131.2
1816 Male, age 51, unknown 121.3
2224 Female, age 72, unknown 120.3
1944 Female, age 72, unknown 114.2
2273 Male, age 74, both hemispheres 98.7
Red nucleus
nTPM: 234.0
2823 Male, age 76, right hemisphere 283.4
2584 Male, age 75, left hemisphere 261.5
1904 Male, age 53, unknown 259.8
2785 Male, age 18, unknown 253.5
2769 Male, age 72, unknown 249.6
2227 Male, age 72, unknown 247.5
2588 Male, age 74, left hemisphere 247.3
1865 Male, age 51, unknown 239.3
2503 Female, age 72, unknown 223.3
1821 Female, age 72, unknown 190.8
2725 Female, age 75, unknown 177.1
1954 Female, age 42, unknown 174.5
Substantia nigra
nTPM: 150.7
2583 Male, age 75, right hemisphere 222.6
2590 Female, age 75, unknown 189.4
1851 Male, age 51, unknown 163.8
2409 Female, age 72, unknown 160.2
1889 Female, age 72, unknown 147.0
1941 Male, age 53, unknown 140.6
2699 Male, age 18, unknown 126.9
2665 Male, age 74, both hemispheres 124.4
2241 Male, age 72, unknown 118.3
1916 Female, age 42, unknown 114.2
Superior colliculus
nTPM: 177.7
1913 Female, age 42, unknown 242.8
1995 Male, age 72, unknown 225.8
1895 Male, age 76, right hemisphere 204.3
2668 Female, age 75, unknown 186.2
1839 Male, age 51, unknown 173.0
2664 Male, age 75, both hemispheres 163.8
2587 Male, age 74, left hemisphere 159.0
1796 Male, age 53, unknown 157.3
2261 Male, age 18, unknown 138.2
2087 Female, age 72, unknown 126.3
Ventral tegmental area
nTPM: 156.4
2223 Female, age 72, unknown 189.4
2410 Female, age 72, unknown 179.4
1942 Male, age 51, unknown 161.9
2021 Male, age 53, unknown 141.8
2218 Male, age 76, both hemispheres 138.8
1915 Female, age 42, unknown 127.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.3
Samples: 183

Max nTPM: 224.4
Min nTPM: 8.3
Std nTPM: 30.8
Median nTPM: 44.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 224.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 174.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 164.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 154.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 128.4
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 112.4
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 109.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 109.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 103.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 100.8
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 100.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 309.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 309.1
FF:10158-103A5 76 years, female 309.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.4
Samples: 3

Max nTPM: 49.0
Min nTPM: 30.2
Sample A Female 49.0
Sample B Female 30.2
Sample C Male 33.0
Midbrain
nTPM: 31.6
Samples: 3

Max nTPM: 37.0
Min nTPM: 25.4
Sample B Female 32.3
Sample C Male 37.0
Sample D Male 25.4
Periaqueductal gray
nTPM: 25.5
Samples: 3

Max nTPM: 28.7
Min nTPM: 23.6
Sample B Female 28.7
Sample C Male 24.1
Sample D Male 23.6
Superior colliculi
nTPM: 29.8
Samples: 4

Max nTPM: 38.4
Min nTPM: 12.4
Sample A Female 38.4
Sample B Female 12.4
Sample C Male 34.4
Sample D Male 34.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 143.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 143.3
Samples: 4

Max nTPM: 159.4
Min nTPM: 130.7
Sample A 130.7
Sample B 159.4
Sample C 145.9
Sample D 137.2

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 115.3
Rat sample Sample description nTPM
Midbrain
nTPM: 115.3
Samples: 4

Max nTPM: 126.6
Min nTPM: 102.7
Sample A 117.0
Sample A 126.6
Sample A 115.0
Sample A 102.7

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