A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.2
nTPM
Monaco:
77.6
nTPM
Schmiedel:
34.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.2
HPA sample
nTPM
NK-cell nTPM: 14.2
Samples: 6
Max nTPM: 21.9
Min nTPM: 5.4
P10809_1013
21.9
P10809_1033
5.4
P10809_1052
14.8
P10809_1071
18.6
P10809_1093
7.2
P10809_1103
17.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.6
Monaco sample
nTPM
NK-cell nTPM: 77.6
Samples: 4
Max nTPM: 87.5
Min nTPM: 63.3
RHH5316_R3683
75.0
RHH5224_R3596
87.5
RHH5253_R3625
63.3
RHH5282_R3654
84.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.5
Schmiedel sample id
TPM
NK-cell TPM: 34.5
Samples: 90
Max TPM: 49.5
Min TPM: 21.5
NK_1
49.5
NK_2
47.9
NK_3
47.1
NK_4
45.9
NK_5
44.2
NK_6
44.0
NK_7
43.8
NK_8
43.0
NK_9
42.6
NK_10
41.2
NK_11
40.4
NK_12
40.3
NK_13
40.1
NK_14
39.9
NK_15
39.8
NK_16
39.7
NK_17
39.5
NK_18
39.4
NK_19
39.1
NK_20
39.0
NK_21
38.5
NK_22
38.5
NK_23
38.2
NK_24
38.2
NK_25
38.2
NK_26
37.4
NK_27
37.1
NK_28
36.9
NK_29
36.9
NK_30
36.8
NK_31
36.7
NK_32
36.5
NK_33
36.0
NK_34
35.9
NK_35
35.8
NK_36
35.6
NK_37
35.5
NK_38
35.3
NK_39
35.2
NK_40
35.1
NK_41
35.1
NK_42
35.0
NK_43
34.8
NK_44
34.8
NK_45
34.7
NK_46
34.6
NK_47
34.5
NK_48
34.4
NK_49
34.2
NK_50
34.1
NK_51
34.0
NK_52
33.7
NK_53
33.2
NK_54
33.1
NK_55
32.5
NK_56
32.5
NK_57
32.5
NK_58
32.3
NK_59
32.2
NK_60
32.1
NK_61
31.6
NK_62
31.3
NK_63
31.2
NK_64
31.2
NK_65
31.1
NK_66
31.0
NK_67
30.9
NK_68
30.9
NK_69
30.6
NK_70
30.4
NK_71
30.4
NK_72
30.3
NK_73
30.2
NK_74
30.1
NK_75
29.8
NK_76
29.8
NK_77
29.6
NK_78
29.5
NK_79
29.5
NK_80
27.2
NK_81
27.0
NK_82
26.4
NK_83
26.2
NK_84
25.5
NK_85
25.1
NK_86
24.9
NK_87
23.8
NK_88
23.7
NK_89
23.0
NK_90
21.5
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