A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.8
nTPM
Monaco:
84.8
nTPM
Schmiedel:
52.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.8
HPA sample
nTPM
Classical monocyte nTPM: 17.9
Samples: 6
Max nTPM: 24.3
Min nTPM: 7.6
P10809_1003
17.9
P10809_1020
14.6
P10809_1039
7.6
P10809_1058
20.8
P10809_1080
24.3
P10809_1107
22.3
Intermediate monocyte nTPM: 27.8
Samples: 6
Max nTPM: 46.3
Min nTPM: 22.1
P10809_1004
46.3
P10809_1023
22.3
P10809_1042
22.1
P10809_1061
26.3
P10809_1081
25.4
P10809_1108
24.2
Non-classical monocyte nTPM: 27.7
Samples: 5
Max nTPM: 36.6
Min nTPM: 24.3
P10809_1005
36.6
P10809_1053
25.7
P10809_1072
26.5
P10809_1082
25.3
P10809_1109
24.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.8
Monaco sample
nTPM
Classical monocyte nTPM: 84.8
Samples: 4
Max nTPM: 92.2
Min nTPM: 77.6
RHH5313_R3680
77.6
RHH5221_R3593
80.7
RHH5250_R3622
92.2
RHH5279_R3651
88.6
Intermediate monocyte nTPM: 84.0
Samples: 4
Max nTPM: 97.6
Min nTPM: 64.6
RHH5314_R3681
97.6
RHH5222_R3594
93.8
RHH5251_R3623
64.6
RHH5280_R3652
79.9
Non-classical monocyte nTPM: 84.8
Samples: 4
Max nTPM: 103.0
Min nTPM: 71.9
RHH5315_R3682
85.6
RHH5223_R3595
103.0
RHH5252_R3624
71.9
RHH5281_R3653
78.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.5
Schmiedel sample id
TPM
Classical monocyte TPM: 52.5
Samples: 91
Max TPM: 82.0
Min TPM: 32.3
MONOCYTES_1
82.0
MONOCYTES_2
67.2
MONOCYTES_3
66.4
MONOCYTES_4
66.1
MONOCYTES_5
66.0
MONOCYTES_6
64.9
MONOCYTES_7
64.0
MONOCYTES_8
63.9
MONOCYTES_9
63.3
MONOCYTES_10
62.4
MONOCYTES_11
62.3
MONOCYTES_12
62.1
MONOCYTES_13
61.5
MONOCYTES_14
61.4
MONOCYTES_15
61.2
MONOCYTES_16
61.0
MONOCYTES_17
60.6
MONOCYTES_18
59.4
MONOCYTES_19
58.5
MONOCYTES_20
57.8
MONOCYTES_21
57.6
MONOCYTES_22
57.5
MONOCYTES_23
57.2
MONOCYTES_24
57.0
MONOCYTES_25
56.9
MONOCYTES_26
56.3
MONOCYTES_27
56.3
MONOCYTES_28
56.2
MONOCYTES_29
56.1
MONOCYTES_30
55.9
MONOCYTES_31
55.6
MONOCYTES_32
55.1
MONOCYTES_33
55.1
MONOCYTES_34
55.0
MONOCYTES_35
54.8
MONOCYTES_36
54.6
MONOCYTES_37
54.4
MONOCYTES_38
54.3
MONOCYTES_39
54.3
MONOCYTES_40
54.2
MONOCYTES_41
54.1
MONOCYTES_42
53.9
MONOCYTES_43
53.6
MONOCYTES_44
53.1
MONOCYTES_45
53.1
MONOCYTES_46
52.7
MONOCYTES_47
52.6
MONOCYTES_48
52.2
MONOCYTES_49
52.1
MONOCYTES_50
51.9
MONOCYTES_51
51.9
MONOCYTES_52
51.8
MONOCYTES_53
51.4
MONOCYTES_54
51.2
MONOCYTES_55
51.0
MONOCYTES_56
50.7
MONOCYTES_57
50.3
MONOCYTES_58
49.3
MONOCYTES_59
49.2
MONOCYTES_60
49.1
MONOCYTES_61
49.0
MONOCYTES_62
48.9
MONOCYTES_63
48.7
MONOCYTES_64
48.0
MONOCYTES_65
47.6
MONOCYTES_66
46.9
MONOCYTES_67
46.9
MONOCYTES_68
46.6
MONOCYTES_69
46.4
MONOCYTES_70
46.4
MONOCYTES_71
46.3
MONOCYTES_72
46.0
MONOCYTES_73
45.9
MONOCYTES_74
45.8
MONOCYTES_75
45.5
MONOCYTES_76
45.0
MONOCYTES_77
44.7
MONOCYTES_78
43.4
MONOCYTES_79
43.3
MONOCYTES_80
43.3
MONOCYTES_81
43.2
MONOCYTES_82
42.9
MONOCYTES_83
42.8
MONOCYTES_84
42.3
MONOCYTES_85
41.2
MONOCYTES_86
40.3
MONOCYTES_87
38.1
MONOCYTES_88
35.8
MONOCYTES_89
34.7
MONOCYTES_90
34.5
MONOCYTES_91
32.3
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Non-classical monocyte TPM: 33.2
Samples: 90
Max TPM: 56.4
Min TPM: 22.8
M2_1
56.4
M2_2
48.2
M2_3
44.2
M2_4
43.4
M2_5
42.3
M2_6
41.1
M2_7
40.1
M2_8
40.0
M2_9
39.7
M2_10
39.5
M2_11
39.4
M2_12
39.2
M2_13
38.7
M2_14
38.4
M2_15
37.8
M2_16
36.8
M2_17
36.8
M2_18
36.7
M2_19
36.7
M2_20
36.1
M2_21
35.9
M2_22
35.8
M2_23
35.7
M2_24
35.6
M2_25
35.4
M2_26
35.3
M2_27
35.2
M2_28
35.1
M2_29
35.0
M2_30
35.0
M2_31
34.9
M2_32
34.8
M2_33
34.4
M2_34
34.1
M2_35
34.0
M2_36
34.0
M2_37
33.9
M2_38
33.9
M2_39
33.6
M2_40
33.5
M2_41
33.4
M2_42
33.3
M2_43
33.2
M2_44
33.2
M2_45
33.1
M2_46
33.0
M2_47
32.9
M2_48
32.8
M2_49
32.4
M2_50
32.1
M2_51
32.0
M2_52
32.0
M2_53
31.9
M2_54
31.6
M2_55
31.1
M2_56
31.1
M2_57
31.0
M2_58
30.9
M2_59
30.4
M2_60
30.3
M2_61
30.0
M2_62
30.0
M2_63
29.7
M2_64
29.5
M2_65
29.5
M2_66
29.3
M2_67
29.2
M2_68
29.2
M2_69
29.1
M2_70
29.0
M2_71
29.0
M2_72
29.0
M2_73
28.9
M2_74
28.9
M2_75
28.7
M2_76
28.6
M2_77
28.6
M2_78
28.6
M2_79
28.5
M2_80
27.9
M2_81
27.9
M2_82
27.7
M2_83
27.6
M2_84
26.8
M2_85
26.4
M2_86
26.0
M2_87
25.2
M2_88
25.0
M2_89
24.6
M2_90
22.8
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