A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.5
nTPM
Monaco:
107.1
nTPM
Schmiedel:
27.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.5
HPA sample
nTPM
Memory B-cell nTPM: 28.5
Samples: 6
Max nTPM: 40.0
Min nTPM: 6.6
P10809_1017
23.4
P10809_1025
38.2
P10809_1044
6.6
P10809_1063
25.2
P10809_1092
37.5
P10809_1105
40.0
Naive B-cell nTPM: 28.5
Samples: 6
Max nTPM: 49.9
Min nTPM: 16.4
P10809_1011
24.0
P10809_1029
24.0
P10809_1048
49.9
P10809_1067
16.4
P10809_1091
29.2
P10809_1104
27.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 86.5
Samples: 4
Max nTPM: 93.4
Min nTPM: 71.7
RHH5310_R3677
93.2
RHH5218_R3590
87.7
RHH5247_R3619
71.7
RHH5276_R3648
93.4
Naive B-cell nTPM: 78.0
Samples: 4
Max nTPM: 107.3
Min nTPM: 56.3
RHH5308_R3675
84.9
RHH5216_R3588
107.3
RHH5245_R3617
63.5
RHH5274_R3646
56.3
Non-switched memory B-cell nTPM: 99.6
Samples: 4
Max nTPM: 116.6
Min nTPM: 87.6
RHH5309_R3676
116.6
RHH5217_R3589
104.7
RHH5246_R3618
87.6
RHH5275_R3647
89.7
Plasmablast nTPM: 62.5
Samples: 4
Max nTPM: 73.6
Min nTPM: 46.4
RHH5312_R3679
73.6
RHH5220_R3592
46.4
RHH5249_R3621
70.2
RHH5278_R3650
59.9
Switched memory B-cell nTPM: 107.1
Samples: 4
Max nTPM: 125.3
Min nTPM: 92.8
RHH5311_R3678
92.8
RHH5219_R3591
113.2
RHH5248_R3620
125.3
RHH5277_R3649
97.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.1
Schmiedel sample id
TPM
Naive B-cell TPM: 27.2
Samples: 91
Max TPM: 37.4
Min TPM: 9.0
B_CELL_NAIVE_1
37.4
B_CELL_NAIVE_2
36.9
B_CELL_NAIVE_3
36.4
B_CELL_NAIVE_4
35.7
B_CELL_NAIVE_5
34.9
B_CELL_NAIVE_6
34.2
B_CELL_NAIVE_7
34.1
B_CELL_NAIVE_8
33.8
B_CELL_NAIVE_9
33.3
B_CELL_NAIVE_10
33.3
B_CELL_NAIVE_11
33.1
B_CELL_NAIVE_12
31.8
B_CELL_NAIVE_13
31.8
B_CELL_NAIVE_14
31.7
B_CELL_NAIVE_15
31.6
B_CELL_NAIVE_16
31.1
B_CELL_NAIVE_17
31.1
B_CELL_NAIVE_18
30.9
B_CELL_NAIVE_19
30.6
B_CELL_NAIVE_20
30.4
B_CELL_NAIVE_21
30.2
B_CELL_NAIVE_22
29.9
B_CELL_NAIVE_23
29.9
B_CELL_NAIVE_24
29.8
B_CELL_NAIVE_25
29.7
B_CELL_NAIVE_26
29.7
B_CELL_NAIVE_27
29.6
B_CELL_NAIVE_28
29.1
B_CELL_NAIVE_29
28.9
B_CELL_NAIVE_30
28.6
B_CELL_NAIVE_31
28.5
B_CELL_NAIVE_32
28.4
B_CELL_NAIVE_33
28.4
B_CELL_NAIVE_34
28.0
B_CELL_NAIVE_35
28.0
B_CELL_NAIVE_36
28.0
B_CELL_NAIVE_37
28.0
B_CELL_NAIVE_38
27.9
B_CELL_NAIVE_39
27.8
B_CELL_NAIVE_40
27.6
B_CELL_NAIVE_41
27.6
B_CELL_NAIVE_42
27.6
B_CELL_NAIVE_43
27.6
B_CELL_NAIVE_44
27.6
B_CELL_NAIVE_45
27.5
B_CELL_NAIVE_46
27.5
B_CELL_NAIVE_47
27.5
B_CELL_NAIVE_48
27.4
B_CELL_NAIVE_49
27.3
B_CELL_NAIVE_50
27.3
B_CELL_NAIVE_51
27.3
B_CELL_NAIVE_52
27.2
B_CELL_NAIVE_53
27.0
B_CELL_NAIVE_54
26.6
B_CELL_NAIVE_55
26.4
B_CELL_NAIVE_56
26.4
B_CELL_NAIVE_57
26.3
B_CELL_NAIVE_58
26.3
B_CELL_NAIVE_59
26.2
B_CELL_NAIVE_60
26.2
B_CELL_NAIVE_61
26.1
B_CELL_NAIVE_62
26.0
B_CELL_NAIVE_63
25.9
B_CELL_NAIVE_64
25.7
B_CELL_NAIVE_65
25.7
B_CELL_NAIVE_66
25.5
B_CELL_NAIVE_67
25.4
B_CELL_NAIVE_68
25.2
B_CELL_NAIVE_69
24.9
B_CELL_NAIVE_70
24.8
B_CELL_NAIVE_71
24.7
B_CELL_NAIVE_72
24.3
B_CELL_NAIVE_73
23.9
B_CELL_NAIVE_74
23.8
B_CELL_NAIVE_75
23.8
B_CELL_NAIVE_76
23.8
B_CELL_NAIVE_77
23.7
B_CELL_NAIVE_78
22.6
B_CELL_NAIVE_79
22.4
B_CELL_NAIVE_80
22.1
B_CELL_NAIVE_81
21.2
B_CELL_NAIVE_82
21.1
B_CELL_NAIVE_83
20.9
B_CELL_NAIVE_84
20.9
B_CELL_NAIVE_85
20.5
B_CELL_NAIVE_86
20.3
B_CELL_NAIVE_87
18.7
B_CELL_NAIVE_88
16.4
B_CELL_NAIVE_89
16.4
B_CELL_NAIVE_90
14.1
B_CELL_NAIVE_91
9.0
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