A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
70.6
nTPM
Monaco:
234.2
nTPM
Schmiedel:
100.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.6
HPA sample
nTPM
Classical monocyte nTPM: 61.7
Samples: 6
Max nTPM: 73.4
Min nTPM: 41.7
P10809_1003
71.8
P10809_1020
64.5
P10809_1039
57.6
P10809_1058
41.7
P10809_1080
61.1
P10809_1107
73.4
Intermediate monocyte nTPM: 57.3
Samples: 6
Max nTPM: 66.8
Min nTPM: 41.2
P10809_1004
54.1
P10809_1023
62.5
P10809_1042
66.8
P10809_1061
41.2
P10809_1081
53.7
P10809_1108
65.5
Non-classical monocyte nTPM: 70.6
Samples: 5
Max nTPM: 110.8
Min nTPM: 45.2
P10809_1005
61.2
P10809_1053
60.2
P10809_1072
110.8
P10809_1082
45.2
P10809_1109
75.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
234.2
Monaco sample
nTPM
Classical monocyte nTPM: 234.2
Samples: 4
Max nTPM: 283.5
Min nTPM: 171.9
RHH5313_R3680
249.1
RHH5221_R3593
283.5
RHH5250_R3622
232.3
RHH5279_R3651
171.9
Intermediate monocyte nTPM: 222.7
Samples: 4
Max nTPM: 248.7
Min nTPM: 183.9
RHH5314_R3681
237.5
RHH5222_R3594
220.7
RHH5251_R3623
248.7
RHH5280_R3652
183.9
Non-classical monocyte nTPM: 231.7
Samples: 4
Max nTPM: 269.1
Min nTPM: 194.9
RHH5315_R3682
269.1
RHH5223_R3595
237.7
RHH5252_R3624
224.9
RHH5281_R3653
194.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
100.5
Schmiedel sample id
TPM
Classical monocyte TPM: 76.8
Samples: 91
Max TPM: 93.4
Min TPM: 56.6
MONOCYTES_1
93.4
MONOCYTES_2
91.4
MONOCYTES_3
91.0
MONOCYTES_4
90.6
MONOCYTES_5
90.2
MONOCYTES_6
88.8
MONOCYTES_7
88.4
MONOCYTES_8
87.6
MONOCYTES_9
87.0
MONOCYTES_10
86.6
MONOCYTES_11
86.0
MONOCYTES_12
85.7
MONOCYTES_13
84.9
MONOCYTES_14
84.4
MONOCYTES_15
84.3
MONOCYTES_16
84.2
MONOCYTES_17
83.8
MONOCYTES_18
83.3
MONOCYTES_19
83.1
MONOCYTES_20
82.3
MONOCYTES_21
82.3
MONOCYTES_22
82.2
MONOCYTES_23
81.7
MONOCYTES_24
81.5
MONOCYTES_25
81.3
MONOCYTES_26
80.9
MONOCYTES_27
80.0
MONOCYTES_28
79.9
MONOCYTES_29
79.8
MONOCYTES_30
79.6
MONOCYTES_31
79.4
MONOCYTES_32
79.1
MONOCYTES_33
78.7
MONOCYTES_34
78.3
MONOCYTES_35
78.1
MONOCYTES_36
78.1
MONOCYTES_37
78.0
MONOCYTES_38
77.8
MONOCYTES_39
77.8
MONOCYTES_40
77.7
MONOCYTES_41
77.7
MONOCYTES_42
77.4
MONOCYTES_43
77.3
MONOCYTES_44
77.0
MONOCYTES_45
76.9
MONOCYTES_46
76.9
MONOCYTES_47
76.8
MONOCYTES_48
76.7
MONOCYTES_49
76.6
MONOCYTES_50
76.3
MONOCYTES_51
76.1
MONOCYTES_52
76.1
MONOCYTES_53
75.8
MONOCYTES_54
75.3
MONOCYTES_55
74.8
MONOCYTES_56
74.7
MONOCYTES_57
74.4
MONOCYTES_58
74.4
MONOCYTES_59
74.3
MONOCYTES_60
74.1
MONOCYTES_61
73.8
MONOCYTES_62
73.8
MONOCYTES_63
73.6
MONOCYTES_64
73.2
MONOCYTES_65
73.0
MONOCYTES_66
72.6
MONOCYTES_67
71.6
MONOCYTES_68
71.6
MONOCYTES_69
71.5
MONOCYTES_70
71.3
MONOCYTES_71
71.0
MONOCYTES_72
70.9
MONOCYTES_73
70.5
MONOCYTES_74
70.3
MONOCYTES_75
70.2
MONOCYTES_76
70.0
MONOCYTES_77
70.0
MONOCYTES_78
69.4
MONOCYTES_79
69.2
MONOCYTES_80
69.0
MONOCYTES_81
69.0
MONOCYTES_82
68.9
MONOCYTES_83
68.2
MONOCYTES_84
67.4
MONOCYTES_85
66.6
MONOCYTES_86
65.1
MONOCYTES_87
64.7
MONOCYTES_88
63.5
MONOCYTES_89
63.1
MONOCYTES_90
61.8
MONOCYTES_91
56.6
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Non-classical monocyte TPM: 100.5
Samples: 90
Max TPM: 126.8
Min TPM: 73.6
M2_1
126.8
M2_2
125.7
M2_3
124.7
M2_4
123.6
M2_5
118.7
M2_6
118.4
M2_7
117.8
M2_8
116.8
M2_9
115.5
M2_10
115.4
M2_11
114.8
M2_12
112.4
M2_13
112.2
M2_14
110.5
M2_15
110.5
M2_16
109.8
M2_17
109.7
M2_18
109.4
M2_19
108.7
M2_20
107.9
M2_21
107.8
M2_22
107.4
M2_23
107.1
M2_24
106.8
M2_25
105.6
M2_26
104.9
M2_27
104.9
M2_28
104.7
M2_29
104.1
M2_30
103.9
M2_31
103.4
M2_32
103.2
M2_33
102.9
M2_34
102.7
M2_35
102.6
M2_36
102.5
M2_37
102.4
M2_38
102.2
M2_39
102.2
M2_40
102.1
M2_41
101.8
M2_42
101.4
M2_43
101.2
M2_44
101.2
M2_45
100.5
M2_46
100.4
M2_47
100.3
M2_48
100.1
M2_49
99.6
M2_50
99.2
M2_51
98.8
M2_52
98.6
M2_53
98.1
M2_54
97.2
M2_55
96.9
M2_56
96.8
M2_57
96.7
M2_58
96.6
M2_59
96.5
M2_60
96.1
M2_61
96.1
M2_62
96.1
M2_63
95.8
M2_64
95.7
M2_65
95.6
M2_66
95.1
M2_67
95.0
M2_68
93.6
M2_69
93.1
M2_70
93.1
M2_71
92.9
M2_72
92.5
M2_73
92.0
M2_74
91.1
M2_75
90.9
M2_76
90.9
M2_77
90.8
M2_78
90.2
M2_79
90.2
M2_80
87.4
M2_81
85.8
M2_82
85.5
M2_83
84.8
M2_84
84.6
M2_85
84.6
M2_86
83.7
M2_87
81.0
M2_88
77.6
M2_89
76.8
M2_90
73.6
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