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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
36.9
nTPM
HPA Brain:
112.0
nTPM
GTEx:
36.9
nTPM
FANTOM5:
58.7
Scaled Tags Per Million
Mouse:
87.6
nTPM
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA012956
Antibody HPA077702
Glial cells
Not detected
Not detected
Neuronal cells
High
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
112.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 62.6
1898
Male, age 80, left hemisphere
83.8
2621
Female, age 67, right hemisphere
69.9
2148
Female, age 91, left hemisphere
65.8
1855
Male, age 76, left hemisphere
63.6
2529
Female, age 94, left hemisphere
47.4
1911
Female, age 85, right hemisphere
44.9
Dentate gyrus nTPM: 70.6
1927
Female, age 91, both hemispheres
96.8
2531
Female, age 67, both hemispheres
70.9
2010
Male, age 76, both hemispheres
69.3
2246
Female, age 85, both hemispheres
68.4
2528
Male, age 74, both hemispheres
60.4
2530
Female, age 94, left hemisphere
57.9
Entorhinal gyrus nTPM: 84.1
2764
Male, age 80, right hemisphere
109.5
2613
Female, age 94, left hemisphere
97.4
1938
Female, age 85, left hemisphere
96.3
1787
Male, age 76, left hemisphere
90.7
2686
Male, age 75, right hemisphere
61.1
2117
Female, age 91, right hemisphere
49.9
Hippocampus, CA1 nTPM: 74.5
2749
Male, age 80, left hemisphere
97.3
2045
Male, age 76, both hemispheres
83.4
1873
Female, age 85, both hemispheres
75.1
2082
Female, age 91, right hemisphere
59.6
2527
Male, age 74, both hemispheres
57.4
Hippocampus, CA2 nTPM: 66.3
1892
Male, age 76, both hemispheres
94.1
1963
Male, age 80, left hemisphere
78.5
2437
Female, age 94, left hemisphere
59.4
1940
Female, age 85, left hemisphere
57.3
2249
Male, age 74, both hemispheres
54.5
2113
Female, age 91, right hemisphere
54.4
Hippocampus, CA3 nTPM: 71.9
2620
Female, age 94, left hemisphere
96.3
2137
Male, age 80, left hemisphere
70.9
1867
Male, age 76, both hemispheres
70.6
2861
Female, age 67, both hemispheres
68.8
2436
Male, age 74, both hemispheres
66.7
1891
Female, age 85, both hemispheres
58.2
Parahippocampal cortex nTPM: 81.2
1850
Male, age 80, both hemispheres
106.2
1990
Female, age 91, right hemisphere
91.2
1933
Female, age 85, both hemispheres
89.9
2693
Female, age 94, both hemispheres
84.9
2245
Female, age 91, both hemispheres
84.7
2532
Female, age 72, left hemisphere
82.6
2250
Female, age 67, right hemisphere
81.9
2622
Female, age 67, right hemisphere
66.8
2018
Male, age 76, both hemispheres
66.6
2692
Male, age 74, both hemispheres
56.8
Perirhinal gyrus nTPM: 112.0
1847
Female, age 91, left hemisphere
135.3
1794
Male, age 80, right hemisphere
118.2
2848
Male, age 76, right hemisphere
105.6
1841
Female, age 85, right hemisphere
105.4
2521
Female, age 94, right hemisphere
95.6
Subiculum nTPM: 58.1
1977
Female, age 85, both hemispheres
86.5
2619
Male, age 74, both hemispheres
58.2
2438
Female, age 94, left hemisphere
57.3
1901
Male, age 80, both hemispheres
56.7
2729
Female, age 91, right hemisphere
48.0
2042
Male, age 76, both hemispheres
42.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
36.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 36.9
Samples: 197
Max nTPM: 100.4
Min nTPM: 5.4
Std nTPM: 19.6
Median nTPM: 33.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
100.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
93.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
91.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
84.7
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
80.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
78.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
76.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
75.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
75.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
74.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
72.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
72.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
71.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
70.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
70.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
70.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
70.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
67.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
66.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
66.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
66.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
65.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
65.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
65.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
64.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
63.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
63.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
62.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
61.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
59.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
58.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
58.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
58.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
57.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
57.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
56.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
53.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
53.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
53.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
53.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
51.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
51.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
51.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
51.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
50.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
49.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
49.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
49.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
48.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
47.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
46.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
45.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
45.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
45.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
44.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
44.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
44.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
44.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
44.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
44.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
43.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
43.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
43.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
43.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
43.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
43.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
42.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
42.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
42.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
42.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
42.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
42.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
42.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
41.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
41.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
41.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
41.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
41.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
41.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
40.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
40.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
40.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
40.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
39.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
39.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
39.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
38.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
35.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
35.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
35.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
34.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
34.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
34.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
34.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
34.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
33.8
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
33.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
33.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
33.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
32.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
32.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
32.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
32.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
32.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
32.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
32.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
31.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
31.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
31.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
30.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
30.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
30.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
30.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
30.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
30.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
30.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
29.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
29.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
28.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
28.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
28.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
27.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
26.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
26.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
25.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
25.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
24.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
24.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
24.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
24.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
23.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
23.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
23.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
23.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
23.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
22.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
22.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
22.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
21.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
21.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
21.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
21.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
20.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
20.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
20.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
20.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
20.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
20.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
20.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
20.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
19.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
19.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
19.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
19.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
19.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
19.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
18.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
18.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
18.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
18.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
18.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
18.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
18.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
18.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
18.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
17.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
17.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
17.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
17.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
17.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
17.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
17.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
16.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
15.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
15.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
15.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
15.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
14.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
14.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
14.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
14.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
14.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
13.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
13.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
13.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
12.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
12.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
12.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
11.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
10.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
10.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
10.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
9.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
9.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
8.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
6.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
5.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.