MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.4 nTPM
HPA Brain:46.2 nTPM
GTEx:19.4 nTPM
FANTOM5:53.0 Scaled Tags Per Million
Pig:54.9 nTPM
Mouse:9.6 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 46.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.0
2828 Female, age 72, unknown 57.9
2586 Male, age 75, left hemisphere 44.1
1870 Female, age 42, unknown 35.0
1827 Male, age 72, unknown 34.2
1833 Male, age 53, unknown 32.3
1830 Male, age 51, unknown 31.0
2411 Female, age 72, unknown 27.1
2019 Male, age 18, unknown 26.9
2666 Male, age 74, left hemisphere 26.6
2219 Male, age 76, both hemispheres 24.8
Dorsal raphe nucleus
nTPM: 36.9
2016 Female, age 72, unknown 49.4
1828 Male, age 53, unknown 39.8
2298 Female, age 72, unknown 36.4
2047 Male, age 72, unknown 33.6
2750 Male, age 76, both hemispheres 25.4
Inferior colliculus
nTPM: 34.2
1848 Female, age 42, unknown 38.6
2849 Male, age 72, unknown 37.9
2097 Female, age 72, unknown 30.1
1890 Male, age 53, unknown 30.0
Median raphe nucleus
nTPM: 17.5
2220 Male, age 76, midline 17.5
Periaquaductal grey, anterior
nTPM: 36.6
1795 Male, age 51, unknown 39.0
2502 Female, age 75, unknown 37.6
1947 Male, age 18, unknown 33.3
Periaquaductal grey, dorsal
nTPM: 43.2
2850 Male, age 76, both hemispheres 62.3
1840 Male, age 53, unknown 44.2
1831 Male, age 72, unknown 34.0
2464 Female, age 72, unknown 32.2
Periaquaductal grey, lateral
nTPM: 46.2
2140 Male, age 76, both hemispheres 59.6
2053 Male, age 18, unknown 39.6
2272 Male, age 74, both hemispheres 39.5
Pretectal area
nTPM: 37.5
2273 Male, age 74, both hemispheres 63.8
2316 Male, age 76, right hemisphere 49.5
2667 Female, age 75, unknown 40.2
2825 Male, age 18, unknown 36.4
1944 Female, age 72, unknown 35.4
2407 Male, age 75, both hemispheres 33.8
1815 Male, age 53, unknown 33.6
1817 Female, age 42, unknown 31.6
2224 Female, age 72, unknown 31.4
1816 Male, age 51, unknown 29.9
2007 Male, age 72, unknown 27.0
Red nucleus
nTPM: 34.3
2769 Male, age 72, unknown 42.9
2227 Male, age 72, unknown 42.3
2503 Female, age 72, unknown 41.2
1954 Female, age 42, unknown 36.9
1865 Male, age 51, unknown 35.7
1904 Male, age 53, unknown 35.3
2785 Male, age 18, unknown 33.7
2823 Male, age 76, right hemisphere 33.1
2725 Female, age 75, unknown 32.4
1821 Female, age 72, unknown 30.2
2588 Male, age 74, left hemisphere 28.7
2584 Male, age 75, left hemisphere 19.9
Substantia nigra
nTPM: 28.7
2699 Male, age 18, unknown 44.2
1916 Female, age 42, unknown 32.3
2583 Male, age 75, right hemisphere 30.9
1889 Female, age 72, unknown 30.6
1851 Male, age 51, unknown 29.5
2590 Female, age 75, unknown 27.1
1941 Male, age 53, unknown 25.7
2409 Female, age 72, unknown 24.1
2665 Male, age 74, both hemispheres 21.8
2241 Male, age 72, unknown 20.7
Superior colliculus
nTPM: 37.7
1995 Male, age 72, unknown 48.2
2664 Male, age 75, both hemispheres 46.1
1796 Male, age 53, unknown 38.9
1839 Male, age 51, unknown 38.3
1913 Female, age 42, unknown 37.6
2261 Male, age 18, unknown 36.5
2668 Female, age 75, unknown 35.4
2087 Female, age 72, unknown 32.5
2587 Male, age 74, left hemisphere 31.9
1895 Male, age 76, right hemisphere 31.5
Ventral tegmental area
nTPM: 31.0
2021 Male, age 53, unknown 33.1
1942 Male, age 51, unknown 32.8
1915 Female, age 42, unknown 32.6
2218 Male, age 76, both hemispheres 31.1
2223 Female, age 72, unknown 28.8
2410 Female, age 72, unknown 27.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.4
Samples: 183

Max nTPM: 43.7
Min nTPM: 3.2
Std nTPM: 6.9
Median nTPM: 18.7
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 43.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 38.6
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 36.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 36.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 34.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 33.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 32.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 30.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 30.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 30.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 53.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.0
FF:10158-103A5 76 years, female 53.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 54.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.0
Samples: 4

Max nTPM: 58.0
Min nTPM: 40.8
Sample A Female 53.5
Sample B Female 40.8
Sample C Male 47.8
Sample D Male 58.0
Midbrain
nTPM: 55.0
Samples: 4

Max nTPM: 99.8
Min nTPM: 34.6
Sample A Female 99.8
Sample B Female 45.6
Sample C Male 39.8
Sample D Male 34.6
Periaqueductal gray
nTPM: 51.9
Samples: 3

Max nTPM: 54.1
Min nTPM: 49.8
Sample B Female 49.8
Sample C Male 51.7
Sample D Male 54.1
Superior colliculi
nTPM: 44.3
Samples: 4

Max nTPM: 55.6
Min nTPM: 32.5
Sample A Female 55.6
Sample B Female 32.5
Sample C Male 45.8
Sample D Male 43.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 10.5
Min nTPM: 8.9
Sample A Male 10.5
Sample B Male 9.6
Sample C Female 8.9
Sample D Female 9.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68861760 Antisense, RP_050224_02_H08, Mouse strain C57BL/6J (56 days, male) 0.0

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