MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA Brain:25.3 nTPM
GTEx:11.7 nTPM
FANTOM5:141.8 Scaled Tags Per Million
Pig:61.5 nTPM
Mouse:3.8 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 25.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.3
2828 Female, age 72, unknown 19.6
2411 Female, age 72, unknown 19.4
1833 Male, age 53, unknown 19.3
1827 Male, age 72, unknown 18.7
1870 Female, age 42, unknown 18.7
2219 Male, age 76, both hemispheres 18.1
2666 Male, age 74, left hemisphere 17.8
2019 Male, age 18, unknown 17.6
1830 Male, age 51, unknown 17.1
2586 Male, age 75, left hemisphere 16.5
Dorsal raphe nucleus
nTPM: 18.6
2047 Male, age 72, unknown 20.3
2750 Male, age 76, both hemispheres 20.2
2298 Female, age 72, unknown 19.8
1828 Male, age 53, unknown 18.8
2016 Female, age 72, unknown 14.0
Inferior colliculus
nTPM: 17.8
2849 Male, age 72, unknown 21.5
1848 Female, age 42, unknown 17.3
1890 Male, age 53, unknown 16.4
2097 Female, age 72, unknown 15.9
Median raphe nucleus
nTPM: 25.3
2220 Male, age 76, midline 25.3
Periaquaductal grey, anterior
nTPM: 19.6
1795 Male, age 51, unknown 20.6
1947 Male, age 18, unknown 19.2
2502 Female, age 75, unknown 19.0
Periaquaductal grey, dorsal
nTPM: 18.1
1831 Male, age 72, unknown 19.6
1840 Male, age 53, unknown 18.5
2850 Male, age 76, both hemispheres 17.9
2464 Female, age 72, unknown 16.3
Periaquaductal grey, lateral
nTPM: 15.4
2272 Male, age 74, both hemispheres 16.0
2053 Male, age 18, unknown 15.9
2140 Male, age 76, both hemispheres 14.2
Pretectal area
nTPM: 22.5
1944 Female, age 72, unknown 30.5
1816 Male, age 51, unknown 28.1
1817 Female, age 42, unknown 26.1
2007 Male, age 72, unknown 26.1
2667 Female, age 75, unknown 23.5
1815 Male, age 53, unknown 21.8
2224 Female, age 72, unknown 20.1
2407 Male, age 75, both hemispheres 19.9
2825 Male, age 18, unknown 19.3
2273 Male, age 74, both hemispheres 16.9
2316 Male, age 76, right hemisphere 15.0
Red nucleus
nTPM: 17.8
2588 Male, age 74, left hemisphere 20.7
2823 Male, age 76, right hemisphere 19.3
2584 Male, age 75, left hemisphere 19.2
2785 Male, age 18, unknown 19.1
2503 Female, age 72, unknown 19.0
2725 Female, age 75, unknown 17.2
1821 Female, age 72, unknown 17.0
1904 Male, age 53, unknown 17.0
2227 Male, age 72, unknown 16.6
1954 Female, age 42, unknown 16.4
1865 Male, age 51, unknown 16.2
2769 Male, age 72, unknown 16.1
Substantia nigra
nTPM: 20.6
1916 Female, age 42, unknown 27.1
1889 Female, age 72, unknown 23.8
1941 Male, age 53, unknown 22.0
1851 Male, age 51, unknown 21.8
2583 Male, age 75, right hemisphere 20.6
2699 Male, age 18, unknown 20.6
2590 Female, age 75, unknown 19.5
2409 Female, age 72, unknown 17.3
2241 Male, age 72, unknown 16.8
2665 Male, age 74, both hemispheres 16.2
Superior colliculus
nTPM: 19.9
2087 Female, age 72, unknown 26.2
2587 Male, age 74, left hemisphere 21.2
2261 Male, age 18, unknown 21.1
1796 Male, age 53, unknown 20.5
2668 Female, age 75, unknown 20.5
2664 Male, age 75, both hemispheres 18.7
1913 Female, age 42, unknown 18.5
1895 Male, age 76, right hemisphere 18.1
1839 Male, age 51, unknown 18.0
1995 Male, age 72, unknown 15.8
Ventral tegmental area
nTPM: 20.7
2218 Male, age 76, both hemispheres 23.3
1915 Female, age 42, unknown 21.7
2410 Female, age 72, unknown 21.3
2223 Female, age 72, unknown 20.8
2021 Male, age 53, unknown 18.8
1942 Male, age 51, unknown 18.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.7
Samples: 183

Max nTPM: 29.0
Min nTPM: 6.0
Std nTPM: 3.9
Median nTPM: 11.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 29.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 23.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 20.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 20.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 20.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 19.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 19.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 141.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 141.8
FF:10158-103A5 76 years, female 141.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 61.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.0
Samples: 4

Max nTPM: 76.9
Min nTPM: 29.8
Sample A Female 72.1
Sample B Female 45.2
Sample C Male 76.9
Sample D Male 29.8
Midbrain
nTPM: 56.2
Samples: 4

Max nTPM: 75.8
Min nTPM: 41.8
Sample A Female 41.8
Sample B Female 47.3
Sample C Male 75.8
Sample D Male 59.8
Periaqueductal gray
nTPM: 46.4
Samples: 3

Max nTPM: 54.5
Min nTPM: 42.1
Sample B Female 42.7
Sample C Male 54.5
Sample D Male 42.1
Superior colliculi
nTPM: 61.5
Samples: 4

Max nTPM: 74.0
Min nTPM: 40.3
Sample A Female 61.5
Sample B Female 40.3
Sample C Male 74.0
Sample D Male 70.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.2
Sample A Male 4.2
Sample B Male 4.5
Sample C Female 3.2
Sample D Female 3.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68667736 Antisense, RP_050201_02_G06, Mouse strain C57BL/6J (56 days, male) 0.2

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