MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA Brain:24.3 nTPM
GTEx:9.6 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:32.7 nTPM
Mouse:0.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.0
2586 Male, age 75, left hemisphere 20.7
2828 Female, age 72, unknown 15.4
1827 Male, age 72, unknown 11.3
1870 Female, age 42, unknown 11.1
2666 Male, age 74, left hemisphere 11.1
1833 Male, age 53, unknown 9.9
1830 Male, age 51, unknown 9.3
2411 Female, age 72, unknown 7.8
2019 Male, age 18, unknown 7.4
2219 Male, age 76, both hemispheres 5.7
Dorsal raphe nucleus
nTPM: 16.6
2298 Female, age 72, unknown 20.5
2047 Male, age 72, unknown 20.2
2016 Female, age 72, unknown 16.7
1828 Male, age 53, unknown 15.4
2750 Male, age 76, both hemispheres 10.3
Inferior colliculus
nTPM: 10.9
1890 Male, age 53, unknown 15.1
2097 Female, age 72, unknown 11.9
1848 Female, age 42, unknown 8.4
2849 Male, age 72, unknown 8.4
Median raphe nucleus
nTPM: 11.7
2220 Male, age 76, midline 11.7
Periaquaductal grey, anterior
nTPM: 24.3
1947 Male, age 18, unknown 38.3
1795 Male, age 51, unknown 21.1
2502 Female, age 75, unknown 13.5
Periaquaductal grey, dorsal
nTPM: 16.7
2850 Male, age 76, both hemispheres 22.8
1840 Male, age 53, unknown 16.8
1831 Male, age 72, unknown 16.5
2464 Female, age 72, unknown 10.7
Periaquaductal grey, lateral
nTPM: 17.9
2140 Male, age 76, both hemispheres 22.1
2053 Male, age 18, unknown 15.9
2272 Male, age 74, both hemispheres 15.7
Pretectal area
nTPM: 10.7
2273 Male, age 74, both hemispheres 16.7
2224 Female, age 72, unknown 13.4
2825 Male, age 18, unknown 13.3
2667 Female, age 75, unknown 13.0
2407 Male, age 75, both hemispheres 10.4
1817 Female, age 42, unknown 9.4
1944 Female, age 72, unknown 9.3
2316 Male, age 76, right hemisphere 9.1
1815 Male, age 53, unknown 8.5
1816 Male, age 51, unknown 8.5
2007 Male, age 72, unknown 5.9
Red nucleus
nTPM: 10.6
2725 Female, age 75, unknown 17.2
1821 Female, age 72, unknown 15.3
2823 Male, age 76, right hemisphere 11.7
1954 Female, age 42, unknown 11.5
2584 Male, age 75, left hemisphere 11.2
1865 Male, age 51, unknown 10.9
2227 Male, age 72, unknown 9.7
2503 Female, age 72, unknown 9.5
1904 Male, age 53, unknown 9.2
2769 Male, age 72, unknown 8.7
2588 Male, age 74, left hemisphere 7.3
2785 Male, age 18, unknown 5.3
Substantia nigra
nTPM: 19.7
1851 Male, age 51, unknown 30.2
1916 Female, age 42, unknown 25.8
2409 Female, age 72, unknown 24.2
2241 Male, age 72, unknown 23.7
2699 Male, age 18, unknown 22.2
1941 Male, age 53, unknown 16.7
2583 Male, age 75, right hemisphere 15.5
2590 Female, age 75, unknown 15.2
1889 Female, age 72, unknown 12.3
2665 Male, age 74, both hemispheres 11.5
Superior colliculus
nTPM: 11.5
1995 Male, age 72, unknown 16.8
2664 Male, age 75, both hemispheres 12.6
1796 Male, age 53, unknown 12.2
2087 Female, age 72, unknown 11.9
2261 Male, age 18, unknown 11.9
2668 Female, age 75, unknown 11.1
2587 Male, age 74, left hemisphere 10.9
1913 Female, age 42, unknown 10.5
1839 Male, age 51, unknown 8.6
1895 Male, age 76, right hemisphere 8.4
Ventral tegmental area
nTPM: 17.3
1915 Female, age 42, unknown 28.7
1942 Male, age 51, unknown 17.7
2021 Male, age 53, unknown 17.5
2218 Male, age 76, both hemispheres 14.1
2410 Female, age 72, unknown 13.1
2223 Female, age 72, unknown 12.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.6
Samples: 139

Max nTPM: 44.8
Min nTPM: 1.1
Std nTPM: 6.9
Median nTPM: 7.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 44.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 34.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 32.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 30.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 26.1
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 25.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 25.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 24.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 22.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 22.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 22.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.9
FF:10158-103A5 76 years, female 42.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.7
Samples: 4

Max nTPM: 50.5
Min nTPM: 20.2
Sample A Female 30.7
Sample B Female 50.5
Sample C Male 20.2
Sample D Male 29.5
Midbrain
nTPM: 24.1
Samples: 4

Max nTPM: 51.7
Min nTPM: 9.6
Sample A Female 51.7
Sample B Female 9.6
Sample C Male 24.1
Sample D Male 11.0
Periaqueductal gray
nTPM: 16.6
Samples: 3

Max nTPM: 18.6
Min nTPM: 14.8
Sample B Female 16.4
Sample C Male 18.6
Sample D Male 14.8
Superior colliculi
nTPM: 29.4
Samples: 4

Max nTPM: 45.7
Min nTPM: 19.3
Sample A Female 24.8
Sample B Female 45.7
Sample C Male 27.8
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.4
Sample A Male 0.9
Sample B Male 1.0
Sample C Female 0.4
Sample D Female 0.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75826672 Antisense, RP_060601_01_D01, Mouse strain C57BL/6J (56 days, male) 0.1
Midbrain
Expression energy: 0.1
75826672 Antisense, RP_060601_01_D01, Mouse strain C57BL/6J (56 days, male) 0.1

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