MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.3 nTPM
HPA Brain:85.6 nTPM
GTEx:20.3 nTPM
FANTOM5:51.4 Scaled Tags Per Million
Pig:44.9 nTPM
Mouse:66.1 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 85.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.9
2219 Male, age 76, both hemispheres 79.0
2586 Male, age 75, left hemisphere 75.1
2828 Female, age 72, unknown 73.9
1827 Male, age 72, unknown 65.3
2019 Male, age 18, unknown 64.7
1833 Male, age 53, unknown 61.1
2666 Male, age 74, left hemisphere 58.5
1830 Male, age 51, unknown 56.9
1870 Female, age 42, unknown 52.5
2411 Female, age 72, unknown 51.7
Dorsal raphe nucleus
nTPM: 60.7
1828 Male, age 53, unknown 65.8
2047 Male, age 72, unknown 62.5
2750 Male, age 76, both hemispheres 60.7
2016 Female, age 72, unknown 59.4
2298 Female, age 72, unknown 54.9
Inferior colliculus
nTPM: 57.9
1890 Male, age 53, unknown 64.8
1848 Female, age 42, unknown 58.7
2849 Male, age 72, unknown 56.7
2097 Female, age 72, unknown 51.3
Median raphe nucleus
nTPM: 58.3
2220 Male, age 76, midline 58.3
Periaquaductal grey, anterior
nTPM: 64.8
1795 Male, age 51, unknown 71.7
1947 Male, age 18, unknown 61.6
2502 Female, age 75, unknown 61.0
Periaquaductal grey, dorsal
nTPM: 61.3
2850 Male, age 76, both hemispheres 74.6
1831 Male, age 72, unknown 61.6
1840 Male, age 53, unknown 58.0
2464 Female, age 72, unknown 51.1
Periaquaductal grey, lateral
nTPM: 65.7
2140 Male, age 76, both hemispheres 75.6
2272 Male, age 74, both hemispheres 61.2
2053 Male, age 18, unknown 60.2
Pretectal area
nTPM: 67.6
2667 Female, age 75, unknown 77.0
1816 Male, age 51, unknown 74.9
1944 Female, age 72, unknown 74.7
2007 Male, age 72, unknown 72.5
1815 Male, age 53, unknown 70.7
2273 Male, age 74, both hemispheres 69.6
1817 Female, age 42, unknown 65.4
2316 Male, age 76, right hemisphere 64.0
2407 Male, age 75, both hemispheres 62.1
2825 Male, age 18, unknown 57.1
2224 Female, age 72, unknown 56.1
Red nucleus
nTPM: 62.0
2725 Female, age 75, unknown 68.4
2588 Male, age 74, left hemisphere 67.9
2785 Male, age 18, unknown 67.1
2584 Male, age 75, left hemisphere 63.9
2823 Male, age 76, right hemisphere 62.3
1821 Female, age 72, unknown 60.3
1904 Male, age 53, unknown 60.3
2503 Female, age 72, unknown 60.0
2227 Male, age 72, unknown 59.2
2769 Male, age 72, unknown 58.8
1865 Male, age 51, unknown 58.0
1954 Female, age 42, unknown 57.2
Substantia nigra
nTPM: 85.6
1916 Female, age 42, unknown 142.7
2699 Male, age 18, unknown 94.5
1851 Male, age 51, unknown 89.9
2665 Male, age 74, both hemispheres 89.9
2241 Male, age 72, unknown 88.0
1941 Male, age 53, unknown 79.9
2409 Female, age 72, unknown 77.4
1889 Female, age 72, unknown 70.2
2583 Male, age 75, right hemisphere 62.8
2590 Female, age 75, unknown 60.8
Superior colliculus
nTPM: 64.0
2664 Male, age 75, both hemispheres 80.2
2668 Female, age 75, unknown 72.7
2087 Female, age 72, unknown 70.2
1796 Male, age 53, unknown 68.6
2261 Male, age 18, unknown 67.4
1995 Male, age 72, unknown 57.5
2587 Male, age 74, left hemisphere 56.9
1839 Male, age 51, unknown 56.3
1895 Male, age 76, right hemisphere 55.1
1913 Female, age 42, unknown 54.9
Ventral tegmental area
nTPM: 72.3
2218 Male, age 76, both hemispheres 85.1
1915 Female, age 42, unknown 83.1
2410 Female, age 72, unknown 72.2
1942 Male, age 51, unknown 71.6
2223 Female, age 72, unknown 62.0
2021 Male, age 53, unknown 60.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.3
Samples: 183

Max nTPM: 41.5
Min nTPM: 11.3
Std nTPM: 5.2
Median nTPM: 19.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 41.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 40.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 38.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 36.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 35.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 32.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 31.6
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 29.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 29.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 29.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.4
FF:10158-103A5 76 years, female 51.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.8
Samples: 4

Max nTPM: 55.6
Min nTPM: 38.7
Sample A Female 45.5
Sample B Female 38.7
Sample C Male 55.6
Sample D Male 39.3
Midbrain
nTPM: 44.9
Samples: 4

Max nTPM: 57.1
Min nTPM: 34.2
Sample A Female 41.0
Sample B Female 34.2
Sample C Male 57.1
Sample D Male 47.1
Periaqueductal gray
nTPM: 44.5
Samples: 3

Max nTPM: 49.8
Min nTPM: 38.7
Sample B Female 38.7
Sample C Male 49.8
Sample D Male 45.1
Superior colliculi
nTPM: 40.4
Samples: 4

Max nTPM: 48.4
Min nTPM: 27.4
Sample A Female 40.0
Sample B Female 27.4
Sample C Male 48.4
Sample D Male 45.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 66.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.1
Samples: 4

Max nTPM: 67.9
Min nTPM: 64.8
Sample A Male 66.6
Sample B Male 64.8
Sample C Female 67.9
Sample D Female 65.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
68924823 Antisense, RP_050309_01_B01, Mouse strain C57BL/6J (56 days, male) 1.9

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