MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.8 nTPM
HPA Brain:107.8 nTPM
GTEx:63.8 nTPM
FANTOM5:7.7 Scaled Tags Per Million
Pig:148.3 nTPM
Mouse:27.7 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 107.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.5
2666 Male, age 74, left hemisphere 43.2
1827 Male, age 72, unknown 41.1
2828 Female, age 72, unknown 40.5
2411 Female, age 72, unknown 38.9
1833 Male, age 53, unknown 28.9
1870 Female, age 42, unknown 27.3
1830 Male, age 51, unknown 26.1
2219 Male, age 76, both hemispheres 17.9
2019 Male, age 18, unknown 16.6
2586 Male, age 75, left hemisphere 14.3
Dorsal raphe nucleus
nTPM: 107.8
2047 Male, age 72, unknown 159.4
2298 Female, age 72, unknown 131.2
1828 Male, age 53, unknown 107.8
2750 Male, age 76, both hemispheres 84.1
2016 Female, age 72, unknown 56.4
Inferior colliculus
nTPM: 22.4
1890 Male, age 53, unknown 30.7
2097 Female, age 72, unknown 29.2
1848 Female, age 42, unknown 17.0
2849 Male, age 72, unknown 12.8
Median raphe nucleus
nTPM: 95.6
2220 Male, age 76, midline 95.6
Periaquaductal grey, anterior
nTPM: 38.5
1795 Male, age 51, unknown 68.7
2502 Female, age 75, unknown 31.0
1947 Male, age 18, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 46.6
2850 Male, age 76, both hemispheres 76.1
1831 Male, age 72, unknown 50.7
2464 Female, age 72, unknown 33.8
1840 Male, age 53, unknown 25.8
Periaquaductal grey, lateral
nTPM: 62.6
2272 Male, age 74, both hemispheres 83.5
2140 Male, age 76, both hemispheres 52.6
2053 Male, age 18, unknown 51.7
Pretectal area
nTPM: 47.9
1816 Male, age 51, unknown 111.1
1944 Female, age 72, unknown 73.4
2273 Male, age 74, both hemispheres 70.7
1815 Male, age 53, unknown 48.4
2007 Male, age 72, unknown 46.4
2825 Male, age 18, unknown 41.7
2224 Female, age 72, unknown 36.5
2316 Male, age 76, right hemisphere 29.2
2667 Female, age 75, unknown 26.1
1817 Female, age 42, unknown 23.6
2407 Male, age 75, both hemispheres 20.2
Red nucleus
nTPM: 21.5
2785 Male, age 18, unknown 31.8
2725 Female, age 75, unknown 28.8
2823 Male, age 76, right hemisphere 28.1
2503 Female, age 72, unknown 26.9
1821 Female, age 72, unknown 24.4
2588 Male, age 74, left hemisphere 23.1
2584 Male, age 75, left hemisphere 20.1
1865 Male, age 51, unknown 15.6
1904 Male, age 53, unknown 15.3
1954 Female, age 42, unknown 15.2
2769 Male, age 72, unknown 15.1
2227 Male, age 72, unknown 13.8
Substantia nigra
nTPM: 31.7
1889 Female, age 72, unknown 43.8
2590 Female, age 75, unknown 39.4
1851 Male, age 51, unknown 34.3
1916 Female, age 42, unknown 33.8
2241 Male, age 72, unknown 29.7
1941 Male, age 53, unknown 28.3
2583 Male, age 75, right hemisphere 28.3
2665 Male, age 74, both hemispheres 27.6
2699 Male, age 18, unknown 27.1
2409 Female, age 72, unknown 24.5
Superior colliculus
nTPM: 42.1
2261 Male, age 18, unknown 104.1
2087 Female, age 72, unknown 63.6
1913 Female, age 42, unknown 57.2
2587 Male, age 74, left hemisphere 40.9
1995 Male, age 72, unknown 38.7
1796 Male, age 53, unknown 35.6
2668 Female, age 75, unknown 33.8
1895 Male, age 76, right hemisphere 18.1
2664 Male, age 75, both hemispheres 17.5
1839 Male, age 51, unknown 11.4
Ventral tegmental area
nTPM: 50.8
2021 Male, age 53, unknown 64.2
2223 Female, age 72, unknown 63.2
2218 Male, age 76, both hemispheres 50.1
2410 Female, age 72, unknown 47.3
1915 Female, age 42, unknown 46.8
1942 Male, age 51, unknown 33.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 63.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.8
Samples: 183

Max nTPM: 487.3
Min nTPM: 6.8
Std nTPM: 56.7
Median nTPM: 45.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 487.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 414.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 234.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 233.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 224.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 208.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 184.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 181.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 155.4
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 137.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 136.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.7
FF:10158-103A5 76 years, female 7.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 148.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.5
Samples: 4

Max nTPM: 121.1
Min nTPM: 27.9
Sample A Female 40.5
Sample B Female 121.1
Sample C Male 27.9
Sample D Male 36.5
Midbrain
nTPM: 36.6
Samples: 4

Max nTPM: 62.0
Min nTPM: 18.3
Sample A Female 62.0
Sample B Female 21.6
Sample C Male 44.5
Sample D Male 18.3
Periaqueductal gray
nTPM: 28.9
Samples: 3

Max nTPM: 38.1
Min nTPM: 22.9
Sample B Female 22.9
Sample C Male 38.1
Sample D Male 25.7
Superior colliculi
nTPM: 148.3
Samples: 4

Max nTPM: 420.5
Min nTPM: 27.3
Sample A Female 111.0
Sample B Female 420.5
Sample C Male 34.3
Sample D Male 27.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.7
Samples: 4

Max nTPM: 28.5
Min nTPM: 25.9
Sample A Male 28.5
Sample B Male 28.1
Sample C Female 25.9
Sample D Female 28.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75931579 Antisense, RP_060606_01_C06, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo