A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.7
nTPM
Monaco:
61.1
nTPM
Schmiedel:
62.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.7
HPA sample
nTPM
NK-cell nTPM: 9.7
Samples: 6
Max nTPM: 14.5
Min nTPM: 0.0
P10809_1013
11.6
P10809_1033
6.9
P10809_1052
14.0
P10809_1071
11.3
P10809_1093
0.0
P10809_1103
14.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.1
Monaco sample
nTPM
NK-cell nTPM: 61.1
Samples: 4
Max nTPM: 68.6
Min nTPM: 51.6
RHH5316_R3683
63.8
RHH5224_R3596
51.6
RHH5253_R3625
60.4
RHH5282_R3654
68.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.5
Schmiedel sample id
TPM
NK-cell TPM: 62.5
Samples: 90
Max TPM: 105.7
Min TPM: 17.6
NK_1
105.7
NK_2
105.1
NK_3
103.4
NK_4
100.1
NK_5
98.6
NK_6
98.6
NK_7
98.1
NK_8
97.5
NK_9
97.4
NK_10
97.4
NK_11
97.3
NK_12
96.3
NK_13
95.0
NK_14
92.9
NK_15
92.1
NK_16
89.4
NK_17
87.0
NK_18
83.2
NK_19
80.5
NK_20
80.0
NK_21
79.8
NK_22
78.4
NK_23
78.0
NK_24
76.9
NK_25
76.8
NK_26
74.8
NK_27
73.5
NK_28
71.5
NK_29
71.1
NK_30
70.9
NK_31
70.8
NK_32
70.2
NK_33
68.7
NK_34
67.6
NK_35
67.3
NK_36
67.1
NK_37
66.7
NK_38
66.0
NK_39
65.9
NK_40
65.5
NK_41
65.3
NK_42
65.0
NK_43
63.2
NK_44
63.1
NK_45
62.6
NK_46
62.1
NK_47
62.1
NK_48
61.8
NK_49
60.9
NK_50
60.8
NK_51
60.6
NK_52
58.1
NK_53
57.5
NK_54
56.2
NK_55
54.2
NK_56
54.1
NK_57
53.6
NK_58
53.5
NK_59
53.5
NK_60
52.4
NK_61
51.7
NK_62
50.5
NK_63
49.8
NK_64
48.0
NK_65
46.3
NK_66
46.2
NK_67
46.2
NK_68
46.0
NK_69
44.7
NK_70
44.6
NK_71
44.4
NK_72
40.7
NK_73
40.7
NK_74
39.5
NK_75
39.3
NK_76
39.0
NK_77
38.3
NK_78
36.5
NK_79
35.7
NK_80
35.5
NK_81
34.9
NK_82
31.7
NK_83
30.2
NK_84
28.6
NK_85
26.5
NK_86
23.1
NK_87
22.5
NK_88
19.6
NK_89
18.5
NK_90
17.6
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