A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.7
nTPM
Monaco:
60.5
nTPM
Schmiedel:
35.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
HPA sample
nTPM
Classical monocyte nTPM: 8.0
Samples: 6
Max nTPM: 10.3
Min nTPM: 5.7
P10809_1003
10.3
P10809_1020
7.1
P10809_1039
5.7
P10809_1058
8.1
P10809_1080
7.7
P10809_1107
8.8
Intermediate monocyte nTPM: 10.6
Samples: 6
Max nTPM: 19.6
Min nTPM: 6.8
P10809_1004
10.3
P10809_1023
6.8
P10809_1042
10.9
P10809_1061
19.6
P10809_1081
6.9
P10809_1108
8.9
Non-classical monocyte nTPM: 15.7
Samples: 5
Max nTPM: 40.3
Min nTPM: 7.1
P10809_1005
12.9
P10809_1053
10.5
P10809_1072
40.3
P10809_1082
7.9
P10809_1109
7.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.5
Monaco sample
nTPM
Classical monocyte nTPM: 46.1
Samples: 4
Max nTPM: 50.5
Min nTPM: 42.5
RHH5313_R3680
48.4
RHH5221_R3593
42.5
RHH5250_R3622
50.5
RHH5279_R3651
43.1
Intermediate monocyte nTPM: 54.4
Samples: 4
Max nTPM: 70.6
Min nTPM: 36.1
RHH5314_R3681
59.7
RHH5222_R3594
70.6
RHH5251_R3623
36.1
RHH5280_R3652
51.3
Non-classical monocyte nTPM: 60.5
Samples: 4
Max nTPM: 65.5
Min nTPM: 50.9
RHH5315_R3682
65.5
RHH5223_R3595
64.6
RHH5252_R3624
50.9
RHH5281_R3653
61.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.5
Schmiedel sample id
TPM
Classical monocyte TPM: 32.2
Samples: 91
Max TPM: 47.5
Min TPM: 16.0
MONOCYTES_1
47.5
MONOCYTES_2
46.8
MONOCYTES_3
46.7
MONOCYTES_4
46.1
MONOCYTES_5
45.1
MONOCYTES_6
43.2
MONOCYTES_7
43.0
MONOCYTES_8
42.7
MONOCYTES_9
41.9
MONOCYTES_10
41.8
MONOCYTES_11
41.4
MONOCYTES_12
41.2
MONOCYTES_13
41.0
MONOCYTES_14
40.8
MONOCYTES_15
40.1
MONOCYTES_16
39.8
MONOCYTES_17
39.8
MONOCYTES_18
39.5
MONOCYTES_19
39.2
MONOCYTES_20
39.2
MONOCYTES_21
39.0
MONOCYTES_22
38.8
MONOCYTES_23
38.5
MONOCYTES_24
38.5
MONOCYTES_25
38.5
MONOCYTES_26
38.1
MONOCYTES_27
38.1
MONOCYTES_28
37.8
MONOCYTES_29
37.7
MONOCYTES_30
37.6
MONOCYTES_31
36.5
MONOCYTES_32
36.3
MONOCYTES_33
36.3
MONOCYTES_34
36.0
MONOCYTES_35
35.7
MONOCYTES_36
35.4
MONOCYTES_37
34.2
MONOCYTES_38
33.8
MONOCYTES_39
33.7
MONOCYTES_40
33.7
MONOCYTES_41
33.6
MONOCYTES_42
33.2
MONOCYTES_43
33.1
MONOCYTES_44
32.8
MONOCYTES_45
32.6
MONOCYTES_46
32.4
MONOCYTES_47
32.4
MONOCYTES_48
32.3
MONOCYTES_49
32.1
MONOCYTES_50
31.7
MONOCYTES_51
31.4
MONOCYTES_52
30.6
MONOCYTES_53
30.6
MONOCYTES_54
30.6
MONOCYTES_55
30.3
MONOCYTES_56
30.2
MONOCYTES_57
30.1
MONOCYTES_58
29.9
MONOCYTES_59
29.5
MONOCYTES_60
29.3
MONOCYTES_61
29.0
MONOCYTES_62
28.7
MONOCYTES_63
28.1
MONOCYTES_64
27.7
MONOCYTES_65
27.6
MONOCYTES_66
27.5
MONOCYTES_67
27.3
MONOCYTES_68
26.9
MONOCYTES_69
26.5
MONOCYTES_70
26.1
MONOCYTES_71
25.5
MONOCYTES_72
25.2
MONOCYTES_73
24.7
MONOCYTES_74
24.3
MONOCYTES_75
24.3
MONOCYTES_76
23.9
MONOCYTES_77
23.6
MONOCYTES_78
23.4
MONOCYTES_79
22.9
MONOCYTES_80
21.6
MONOCYTES_81
21.2
MONOCYTES_82
20.7
MONOCYTES_83
20.5
MONOCYTES_84
20.2
MONOCYTES_85
19.4
MONOCYTES_86
18.7
MONOCYTES_87
18.1
MONOCYTES_88
17.9
MONOCYTES_89
17.4
MONOCYTES_90
16.6
MONOCYTES_91
16.0
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Non-classical monocyte TPM: 35.5
Samples: 90
Max TPM: 61.1
Min TPM: 10.7
M2_1
61.1
M2_2
55.1
M2_3
53.0
M2_4
53.0
M2_5
52.6
M2_6
51.5
M2_7
51.3
M2_8
51.1
M2_9
50.3
M2_10
48.7
M2_11
48.3
M2_12
47.8
M2_13
47.7
M2_14
47.6
M2_15
47.1
M2_16
46.5
M2_17
46.1
M2_18
46.0
M2_19
45.8
M2_20
45.5
M2_21
45.4
M2_22
45.4
M2_23
45.3
M2_24
45.1
M2_25
44.5
M2_26
44.4
M2_27
43.7
M2_28
42.3
M2_29
42.2
M2_30
41.3
M2_31
41.2
M2_32
41.1
M2_33
40.9
M2_34
40.6
M2_35
40.3
M2_36
40.2
M2_37
39.6
M2_38
39.6
M2_39
38.4
M2_40
38.0
M2_41
37.3
M2_42
37.1
M2_43
36.9
M2_44
36.9
M2_45
36.2
M2_46
36.2
M2_47
35.6
M2_48
35.5
M2_49
35.3
M2_50
34.9
M2_51
34.8
M2_52
34.5
M2_53
34.0
M2_54
33.7
M2_55
33.5
M2_56
33.1
M2_57
32.7
M2_58
31.9
M2_59
31.7
M2_60
31.4
M2_61
30.6
M2_62
30.5
M2_63
30.1
M2_64
29.5
M2_65
28.8
M2_66
28.5
M2_67
28.4
M2_68
26.8
M2_69
26.8
M2_70
25.9
M2_71
25.8
M2_72
25.5
M2_73
25.3
M2_74
23.3
M2_75
22.3
M2_76
22.2
M2_77
22.0
M2_78
21.2
M2_79
21.1
M2_80
19.1
M2_81
18.7
M2_82
18.6
M2_83
18.2
M2_84
17.2
M2_85
16.7
M2_86
15.4
M2_87
13.3
M2_88
12.6
M2_89
12.5
M2_90
10.7
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