MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:103.9 nTPM
HPA Brain:103.0 nTPM
GTEx:103.9 nTPM
FANTOM5:126.0 Scaled Tags Per Million
Mouse:101.7 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 103.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.0
2828 Female, age 72, unknown 131.8
2586 Male, age 75, left hemisphere 116.9
2666 Male, age 74, left hemisphere 87.8
1827 Male, age 72, unknown 85.8
1870 Female, age 42, unknown 81.9
2411 Female, age 72, unknown 78.3
1833 Male, age 53, unknown 75.4
1830 Male, age 51, unknown 70.9
2219 Male, age 76, both hemispheres 63.7
2019 Male, age 18, unknown 57.8
Dorsal raphe nucleus
nTPM: 87.8
2047 Male, age 72, unknown 103.9
1828 Male, age 53, unknown 96.0
2016 Female, age 72, unknown 91.5
2298 Female, age 72, unknown 77.5
2750 Male, age 76, both hemispheres 70.0
Inferior colliculus
nTPM: 98.7
1848 Female, age 42, unknown 109.2
1890 Male, age 53, unknown 99.8
2097 Female, age 72, unknown 94.5
2849 Male, age 72, unknown 91.4
Median raphe nucleus
nTPM: 57.0
2220 Male, age 76, midline 57.0
Periaquaductal grey, anterior
nTPM: 90.3
1947 Male, age 18, unknown 100.8
1795 Male, age 51, unknown 89.3
2502 Female, age 75, unknown 80.9
Periaquaductal grey, dorsal
nTPM: 84.8
2464 Female, age 72, unknown 98.6
1840 Male, age 53, unknown 88.7
2850 Male, age 76, both hemispheres 77.9
1831 Male, age 72, unknown 74.2
Periaquaductal grey, lateral
nTPM: 83.4
2053 Male, age 18, unknown 103.7
2140 Male, age 76, both hemispheres 92.4
2272 Male, age 74, both hemispheres 54.0
Pretectal area
nTPM: 83.2
1817 Female, age 42, unknown 103.2
2825 Male, age 18, unknown 100.0
2667 Female, age 75, unknown 95.9
2316 Male, age 76, right hemisphere 93.0
1944 Female, age 72, unknown 89.3
1815 Male, age 53, unknown 87.1
1816 Male, age 51, unknown 86.9
2224 Female, age 72, unknown 74.9
2007 Male, age 72, unknown 68.5
2407 Male, age 75, both hemispheres 58.5
2273 Male, age 74, both hemispheres 58.3
Red nucleus
nTPM: 103.0
2503 Female, age 72, unknown 123.4
1954 Female, age 42, unknown 121.7
2588 Male, age 74, left hemisphere 117.9
1821 Female, age 72, unknown 116.1
2227 Male, age 72, unknown 111.6
2769 Male, age 72, unknown 110.9
2823 Male, age 76, right hemisphere 108.6
1865 Male, age 51, unknown 100.4
1904 Male, age 53, unknown 98.3
2725 Female, age 75, unknown 97.5
2584 Male, age 75, left hemisphere 71.8
2785 Male, age 18, unknown 57.8
Substantia nigra
nTPM: 92.9
2699 Male, age 18, unknown 123.2
1916 Female, age 42, unknown 110.7
1851 Male, age 51, unknown 97.9
2241 Male, age 72, unknown 91.6
1889 Female, age 72, unknown 91.4
2409 Female, age 72, unknown 88.5
2665 Male, age 74, both hemispheres 88.3
2583 Male, age 75, right hemisphere 81.7
1941 Male, age 53, unknown 78.7
2590 Female, age 75, unknown 77.2
Superior colliculus
nTPM: 84.9
2668 Female, age 75, unknown 98.7
2664 Male, age 75, both hemispheres 94.5
2087 Female, age 72, unknown 93.4
2261 Male, age 18, unknown 88.6
1796 Male, age 53, unknown 87.0
1839 Male, age 51, unknown 82.1
1995 Male, age 72, unknown 81.9
1895 Male, age 76, right hemisphere 80.4
1913 Female, age 42, unknown 71.5
2587 Male, age 74, left hemisphere 71.1
Ventral tegmental area
nTPM: 79.2
2410 Female, age 72, unknown 93.1
1915 Female, age 42, unknown 88.0
1942 Male, age 51, unknown 83.9
2021 Male, age 53, unknown 79.7
2223 Female, age 72, unknown 66.9
2218 Male, age 76, both hemispheres 63.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 103.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.9
Samples: 183

Max nTPM: 236.1
Min nTPM: 16.5
Std nTPM: 45.8
Median nTPM: 97.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 236.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 228.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 220.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 219.1
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 208.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 200.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 197.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 186.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 181.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 180.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 177.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 126.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.0
FF:10158-103A5 76 years, female 126.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 101.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 101.7
Samples: 4

Max nTPM: 117.1
Min nTPM: 93.0
Sample A Male 117.1
Sample B Male 93.7
Sample C Female 93.0
Sample D Female 103.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71210908 Antisense, RP_050810_04_G08, Mouse strain C57BL/6J (56 days, male) 0.2

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