On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
168.4
nTPM
HPA Brain:
589.4
nTPM
GTEx:
168.4
nTPM
FANTOM5:
43.1
Scaled Tags Per Million
Macaque:
309.7
nTPM
Rat:
380.8
nTPM
Pig:
1837.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
589.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 123.3
2019
Male, age 18, unknown
415.4
1827
Male, age 72, unknown
302.8
2828
Female, age 72, unknown
174.9
2219
Male, age 76, both hemispheres
81.8
1870
Female, age 42, unknown
57.9
2411
Female, age 72, unknown
51.0
2586
Male, age 75, left hemisphere
46.9
2666
Male, age 74, left hemisphere
44.0
1830
Male, age 51, unknown
30.1
1833
Male, age 53, unknown
28.2
Dorsal raphe nucleus nTPM: 24.0
2298
Female, age 72, unknown
48.2
2750
Male, age 76, both hemispheres
27.6
1828
Male, age 53, unknown
24.8
2016
Female, age 72, unknown
13.1
2047
Male, age 72, unknown
6.5
Inferior colliculus nTPM: 145.4
2097
Female, age 72, unknown
290.6
1890
Male, age 53, unknown
190.6
1848
Female, age 42, unknown
63.2
2849
Male, age 72, unknown
37.4
Median raphe nucleus nTPM: 10.3
2220
Male, age 76, midline
10.3
Periaquaductal grey, anterior nTPM: 101.8
1795
Male, age 51, unknown
239.5
2502
Female, age 75, unknown
60.0
1947
Male, age 18, unknown
5.9
Periaquaductal grey, dorsal nTPM: 111.3
1831
Male, age 72, unknown
302.7
2464
Female, age 72, unknown
54.0
2850
Male, age 76, both hemispheres
45.3
1840
Male, age 53, unknown
43.3
Periaquaductal grey, lateral nTPM: 83.0
2053
Male, age 18, unknown
128.8
2272
Male, age 74, both hemispheres
74.2
2140
Male, age 76, both hemispheres
45.9
Pretectal area nTPM: 589.4
1815
Male, age 53, unknown
1271.1
1816
Male, age 51, unknown
1260.1
1817
Female, age 42, unknown
1255.2
1944
Female, age 72, unknown
1092.0
2007
Male, age 72, unknown
924.6
2667
Female, age 75, unknown
277.0
2273
Male, age 74, both hemispheres
142.9
2407
Male, age 75, both hemispheres
89.6
2224
Female, age 72, unknown
58.5
2316
Male, age 76, right hemisphere
57.7
2825
Male, age 18, unknown
55.1
Red nucleus nTPM: 83.3
2785
Male, age 18, unknown
416.0
2584
Male, age 75, left hemisphere
87.7
2588
Male, age 74, left hemisphere
76.6
2503
Female, age 72, unknown
68.2
2823
Male, age 76, right hemisphere
67.6
2725
Female, age 75, unknown
56.6
1904
Male, age 53, unknown
50.1
1821
Female, age 72, unknown
45.9
1954
Female, age 42, unknown
45.5
1865
Male, age 51, unknown
39.8
2769
Male, age 72, unknown
22.6
2227
Male, age 72, unknown
22.4
Substantia nigra nTPM: 118.1
1889
Female, age 72, unknown
598.9
2665
Male, age 74, both hemispheres
197.4
2409
Female, age 72, unknown
89.6
1916
Female, age 42, unknown
49.8
2583
Male, age 75, right hemisphere
49.2
2590
Female, age 75, unknown
47.8
1851
Male, age 51, unknown
43.3
2241
Male, age 72, unknown
41.8
1941
Male, age 53, unknown
38.8
2699
Male, age 18, unknown
24.9
Superior colliculus nTPM: 283.5
2087
Female, age 72, unknown
767.9
1913
Female, age 42, unknown
524.2
1995
Male, age 72, unknown
347.5
1796
Male, age 53, unknown
327.7
2261
Male, age 18, unknown
314.4
2668
Female, age 75, unknown
241.4
1895
Male, age 76, right hemisphere
98.8
2664
Male, age 75, both hemispheres
88.5
2587
Male, age 74, left hemisphere
75.7
1839
Male, age 51, unknown
48.9
Ventral tegmental area nTPM: 34.7
2410
Female, age 72, unknown
48.8
2218
Male, age 76, both hemispheres
47.5
1942
Male, age 51, unknown
35.8
1915
Female, age 42, unknown
35.0
2223
Female, age 72, unknown
20.9
2021
Male, age 53, unknown
20.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
168.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 168.4
Samples: 183
Max nTPM: 2602.7
Min nTPM: 10.3
Std nTPM: 262.2
Median nTPM: 106.0
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
2602.7
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
2033.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
930.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
692.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
566.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
554.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
533.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
455.1
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
422.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
411.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
403.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
403.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
348.0
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
341.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
338.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
338.0
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
333.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
325.5
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
323.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
318.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
317.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
309.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
287.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
280.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
277.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
266.1
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
259.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
249.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
248.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
241.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
240.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
232.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
232.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
226.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
226.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
225.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
220.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
220.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
214.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
213.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
210.9
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
205.7
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
200.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
200.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
198.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
191.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
190.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
188.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
184.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
178.6
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
174.1
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
173.8
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
168.2
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
165.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
164.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
160.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
159.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
156.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
153.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
149.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
149.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
148.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
148.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
146.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
144.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
144.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
141.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
138.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
137.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
136.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
134.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
134.4
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
134.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
132.9
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
132.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
132.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
130.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
128.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
127.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
122.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
121.7
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
121.2
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
119.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
118.8
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
114.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
114.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
110.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
109.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
108.3
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
107.9
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
106.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
106.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
104.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
104.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
103.8
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
103.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
102.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
101.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
101.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
99.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
97.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
97.2
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
96.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
96.1
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
95.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
95.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
95.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
93.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
93.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
91.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
91.0
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
90.5
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
85.2
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
82.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
81.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
80.8
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
79.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
77.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
77.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
76.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
74.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
74.3
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
72.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
71.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
69.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
69.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
68.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
67.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
67.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
67.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
66.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
65.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
65.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
64.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
61.0
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
57.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
57.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
56.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
55.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
55.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
55.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
54.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
53.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
52.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
52.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
52.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
51.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
50.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
48.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
48.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
47.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
46.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
45.7
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
45.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
43.7
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
43.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
42.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
41.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
41.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
41.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
38.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
38.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
38.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
38.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
37.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
32.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
32.2
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
32.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
30.8
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
30.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
29.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
27.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
27.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
27.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
24.8
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
21.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
21.5
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
18.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
17.5
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
16.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
14.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
11.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
10.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
309.7
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 100.9
Samples: 1
Max nTPM: 100.9
Min nTPM: 100.9
Sample A
100.9
Midbrain nTPM: 174.8
Samples: 1
Max nTPM: 174.8
Min nTPM: 174.8
Sample A
174.8
Superior colliculi nTPM: 309.7
Samples: 1
Max nTPM: 309.7
Min nTPM: 309.7
Sample A
309.7
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1837.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 411.1
Samples: 3
Max nTPM: 567.6
Min nTPM: 261.4
Sample A
Female
404.2
Sample B
Female
261.4
Sample C
Male
567.6
Midbrain nTPM: 1798.5
Samples: 3
Max nTPM: 5007.8
Min nTPM: 188.8
Sample B
Female
188.8
Sample C
Male
5007.8
Sample D
Male
198.8
Periaqueductal gray nTPM: 138.5
Samples: 3
Max nTPM: 168.8
Min nTPM: 104.5
Sample B
Female
104.5
Sample C
Male
168.8
Sample D
Male
142.2
Superior colliculi nTPM: 1837.8
Samples: 4
Max nTPM: 4201.2
Min nTPM: 354.8
Sample A
Female
354.8
Sample B
Female
1421.4
Sample C
Male
4201.2
Sample D
Male
1373.8
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
380.8
Rat sample
Sample description
nTPM
Midbrain nTPM: 380.8
Samples: 4
Max nTPM: 433.1
Min nTPM: 322.4
Sample A
433.1
Sample A
322.4
Sample A
378.8
Sample A
388.9
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The Human Protein Atlas project is funded
