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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • PCP4
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN72 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX
FRONTAL CORTEX FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS
MIDDLE TEMPORAL GYRUS MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:118.1 nTPM
GTEx:168.4 nTPM
FANTOM5:43.1 Scaled Tags Per Million
Macaque:100.9 nTPM
Pig:411.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.1
Sample id Sample description nTPM
Substantia nigra
nTPM: 118.1
1889 Female, age 72, unknown 598.9
2665 Male, age 74, both hemispheres 197.4
2409 Female, age 72, unknown 89.6
1916 Female, age 42, unknown 49.8
2583 Male, age 75, right hemisphere 49.2
2590 Female, age 75, unknown 47.8
1851 Male, age 51, unknown 43.3
2241 Male, age 72, unknown 41.8
1941 Male, age 53, unknown 38.8
2699 Male, age 18, unknown 24.9

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 168.4
Samples: 183

Max nTPM: 2602.7
Min nTPM: 10.3
Std nTPM: 262.2
Median nTPM: 106.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 2602.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 2033.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 930.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 692.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 566.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 554.0
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 533.1
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 455.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 422.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 411.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 403.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 403.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 348.0
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 341.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 338.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 338.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 333.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 325.5
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 323.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 318.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 317.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 309.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 287.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 280.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 277.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 266.1
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 259.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 249.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 248.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 241.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 240.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 232.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 232.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 226.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 226.7
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 225.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 220.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 220.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 214.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 213.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 210.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 205.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 200.8
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 200.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 198.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 191.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 190.0
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 188.5
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 184.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 178.6
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 174.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 173.8
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 168.2
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 165.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 164.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 160.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 159.5
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 156.3
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 153.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 149.6
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 149.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 148.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 148.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 146.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 144.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 144.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 141.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 138.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 137.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 136.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 134.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 134.4
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 134.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 132.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 132.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 132.5
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 130.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 128.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 127.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 122.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 121.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 121.2
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 119.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 118.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 114.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 114.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 110.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 109.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 108.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 107.9
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 106.8
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 106.0
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 104.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 104.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 103.8
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 103.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 102.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 101.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 101.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 99.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 97.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 97.2
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 96.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 96.1
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 95.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 95.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 95.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 93.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 93.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 91.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 91.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 90.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 85.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 82.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 81.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 80.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 79.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 77.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 77.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 76.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 74.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 74.3
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 72.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 71.3
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 69.9
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 69.0
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 68.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 67.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 67.3
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 67.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 66.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 65.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 65.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 64.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 61.0
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 57.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 57.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 56.1
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 55.7
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 55.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 55.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 54.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 53.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 52.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 52.4
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 52.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 51.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 50.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 48.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 48.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 47.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 46.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 45.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 45.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 43.7
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 43.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 42.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 41.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 41.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 41.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 38.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 38.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 38.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 38.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 37.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 32.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 32.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 32.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 30.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 30.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 29.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 27.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 27.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 27.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 24.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 21.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 21.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 18.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 17.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 16.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 11.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 10.3
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

43.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.1
FF:10158-103A5 76 years, female 43.1

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 100.9
Samples: 1

Max nTPM: 100.9
Min nTPM: 100.9
Sample A 100.9

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

411.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 411.1
Samples: 3

Max nTPM: 567.6
Min nTPM: 261.4
Sample A Female 404.2
Sample B Female 261.4
Sample C Male 567.6

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