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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
165.4
Sample id
Sample description
nTPM
Amygdala nTPM: 165.4
2695
Female, age 67, right hemisphere
212.1
2814
Male, age 76, right hemisphere
170.1
1987
Female, age 91, left hemisphere
158.8
2514
Male, age 75, right hemisphere
148.6
2517
Female, age 94, left hemisphere
137.7
Basal amygdala nTPM: 126.3
2609
Male, age 75, right hemisphere
185.7
2243
Female, age 91, right hemisphere
140.7
1955
Male, age 76, both hemispheres
126.4
2110
Male, age 80, left hemisphere
116.3
2685
Female, age 94, left hemisphere
106.3
2827
Female, age 67, right hemisphere
82.1
Central amygdala nTPM: 148.8
1905
Male, age 76, both hemispheres
189.7
2515
Male, age 75, right hemisphere
162.0
2701
Female, age 91, right hemisphere
156.6
2239
Male, age 80, left hemisphere
123.6
2826
Female, age 94, left hemisphere
111.9
Corticomedial amygdala nTPM: 129.2
2428
Male, age 75, right hemisphere
166.1
2242
Female, age 91, right hemisphere
139.6
2829
Male, age 80, left hemisphere
136.6
2240
Male, age 76, both hemispheres
134.0
2429
Female, age 94, left hemisphere
114.2
2535
Female, age 67, right hemisphere
84.5
Lateral amygdala nTPM: 122.1
2516
Male, age 75, right hemisphere
157.6
1883
Male, age 76, both hemispheres
152.1
2255
Female, age 91, right hemisphere
128.9
2534
Female, age 94, left hemisphere
110.6
2256
Male, age 80, left hemisphere
101.8
2830
Female, age 67, right hemisphere
81.2
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
90.5
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 90.5
Samples: 181
Max nTPM: 166.9
Min nTPM: 44.8
Std nTPM: 23.0
Median nTPM: 88.3
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
166.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
162.7
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
152.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
140.6
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
139.9
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
137.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
135.7
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
134.5
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
129.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
127.7
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
127.4
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
127.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
125.8
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
124.0
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
122.8
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
122.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
119.5
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
119.5
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
119.2
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
118.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
117.9
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
117.6
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
116.7
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
116.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
115.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
115.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
115.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
115.0
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
112.9
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
112.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
112.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
112.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
112.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
111.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
111.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
111.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
111.2
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
111.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
111.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
110.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
109.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
109.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
108.8
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
108.5
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
108.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
108.0
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
107.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
107.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
106.7
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
106.1
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
106.0
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
105.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
104.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
104.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
103.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
102.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
102.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
102.1
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
101.9
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
101.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
100.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
99.2
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
99.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
99.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
98.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
98.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
97.0
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
96.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
96.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
95.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
95.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
93.5
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
93.4
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
93.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
93.2
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
92.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
92.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
92.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
92.2
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
92.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
91.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
91.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
90.8
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
90.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
90.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
89.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
89.8
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
89.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
89.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
89.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
88.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
87.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
86.0
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
85.4
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
85.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
84.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
84.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
84.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
84.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
84.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
84.0
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
83.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
82.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
81.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
81.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
81.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
81.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
80.4
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
80.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
80.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
79.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
79.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
79.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
78.9
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
78.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
78.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
78.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
77.5
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
77.3
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
77.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
77.2
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
76.9
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
76.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
76.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
76.0
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
75.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
75.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
74.2
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
74.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
73.9
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
73.4
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
72.9
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
72.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
72.4
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
72.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
72.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
72.1
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
72.0
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
72.0
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
71.7
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
71.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
71.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
70.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
70.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
70.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
70.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
70.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
70.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
69.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
69.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
69.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
68.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
68.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
68.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
68.4
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
67.9
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
67.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
66.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
65.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
65.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
65.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
65.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
64.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
64.9
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
64.2
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
63.8
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
63.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
63.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
62.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
61.4
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
59.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
57.7
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
57.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
55.3
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
54.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
53.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
51.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
48.8
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
48.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
45.0
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
44.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
145.0
Pig sample
Sample description
nTPM
Amygdala nTPM: 145.0
Samples: 4
Max nTPM: 151.3
Min nTPM: 137.5
Sample A
Female
151.3
Sample B
Female
137.5
Sample C
Male
143.8
Sample D
Male
147.3
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
152.7
Mouse sample
Sample description
nTPM
Amygdala nTPM: 152.7
Samples: 4
Max nTPM: 170.0
Min nTPM: 134.3
Sample A
Male
155.3
Sample B
Male
134.3
Sample C
Female
170.0
Sample D
Female
151.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
