MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.8 nTPM
HPA Brain:54.4 nTPM
GTEx:10.8 nTPM
FANTOM5:8.3 Scaled Tags Per Million
Mouse:51.0 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
2586 Male, age 75, left hemisphere 76.3
2219 Male, age 76, both hemispheres 55.8
2666 Male, age 74, left hemisphere 42.2
1827 Male, age 72, unknown 37.8
2828 Female, age 72, unknown 29.7
1833 Male, age 53, unknown 26.6
1870 Female, age 42, unknown 25.9
1830 Male, age 51, unknown 25.6
2411 Female, age 72, unknown 25.2
2019 Male, age 18, unknown 12.9
Dorsal raphe nucleus
nTPM: 21.6
1828 Male, age 53, unknown 26.4
2047 Male, age 72, unknown 24.2
2016 Female, age 72, unknown 22.0
2750 Male, age 76, both hemispheres 19.7
2298 Female, age 72, unknown 15.6
Inferior colliculus
nTPM: 31.3
1848 Female, age 42, unknown 46.1
2849 Male, age 72, unknown 35.5
2097 Female, age 72, unknown 23.4
1890 Male, age 53, unknown 20.1
Median raphe nucleus
nTPM: 12.8
2220 Male, age 76, midline 12.8
Periaquaductal grey, anterior
nTPM: 27.7
1947 Male, age 18, unknown 30.7
1795 Male, age 51, unknown 27.0
2502 Female, age 75, unknown 25.5
Periaquaductal grey, dorsal
nTPM: 22.7
1840 Male, age 53, unknown 30.3
2464 Female, age 72, unknown 26.4
1831 Male, age 72, unknown 20.8
2850 Male, age 76, both hemispheres 13.5
Periaquaductal grey, lateral
nTPM: 21.0
2053 Male, age 18, unknown 29.4
2272 Male, age 74, both hemispheres 17.5
2140 Male, age 76, both hemispheres 16.2
Pretectal area
nTPM: 20.9
2825 Male, age 18, unknown 31.9
1816 Male, age 51, unknown 29.7
2407 Male, age 75, both hemispheres 26.0
2316 Male, age 76, right hemisphere 22.2
2007 Male, age 72, unknown 20.7
1944 Female, age 72, unknown 20.3
1817 Female, age 42, unknown 18.0
2224 Female, age 72, unknown 17.8
1815 Male, age 53, unknown 17.5
2273 Male, age 74, both hemispheres 12.7
2667 Female, age 75, unknown 12.5
Red nucleus
nTPM: 24.0
2584 Male, age 75, left hemisphere 52.8
2725 Female, age 75, unknown 41.9
2588 Male, age 74, left hemisphere 36.5
2227 Male, age 72, unknown 23.7
2769 Male, age 72, unknown 21.8
1821 Female, age 72, unknown 21.6
2503 Female, age 72, unknown 20.4
1865 Male, age 51, unknown 15.9
2823 Male, age 76, right hemisphere 15.3
1904 Male, age 53, unknown 13.0
1954 Female, age 42, unknown 12.9
2785 Male, age 18, unknown 12.6
Substantia nigra
nTPM: 54.4
1941 Male, age 53, unknown 122.2
1916 Female, age 42, unknown 95.5
2699 Male, age 18, unknown 70.6
1851 Male, age 51, unknown 59.3
2241 Male, age 72, unknown 50.2
2409 Female, age 72, unknown 36.3
2665 Male, age 74, both hemispheres 34.4
2583 Male, age 75, right hemisphere 29.7
1889 Female, age 72, unknown 29.2
2590 Female, age 75, unknown 16.9
Superior colliculus
nTPM: 30.1
2668 Female, age 75, unknown 66.4
1895 Male, age 76, right hemisphere 41.3
2261 Male, age 18, unknown 29.5
1839 Male, age 51, unknown 28.4
1796 Male, age 53, unknown 27.3
2087 Female, age 72, unknown 27.2
2664 Male, age 75, both hemispheres 25.8
2587 Male, age 74, left hemisphere 23.8
1913 Female, age 42, unknown 17.2
1995 Male, age 72, unknown 14.4
Ventral tegmental area
nTPM: 39.9
1915 Female, age 42, unknown 61.3
2218 Male, age 76, both hemispheres 50.6
2410 Female, age 72, unknown 37.5
1942 Male, age 51, unknown 34.2
2021 Male, age 53, unknown 28.2
2223 Female, age 72, unknown 27.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.8
Samples: 183

Max nTPM: 53.0
Min nTPM: 0.9
Std nTPM: 7.6
Median nTPM: 9.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 44.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 35.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 30.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 30.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 29.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 28.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 27.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 24.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 23.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 23.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.3
FF:10158-103A5 76 years, female 8.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 51.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.0
Samples: 4

Max nTPM: 55.9
Min nTPM: 42.7
Sample A Male 42.7
Sample B Male 54.1
Sample C Female 55.9
Sample D Female 51.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69540290 Antisense, RP_050426_01_E01, Mouse strain C57BL/6J (56 days, male) 0.0

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