A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.2
nTPM
Monaco:
4.2
nTPM
Schmiedel:
48.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.2
HPA sample
nTPM
NK-cell nTPM: 2.3
Samples: 6
Max nTPM: 4.0
Min nTPM: 0.8
P10809_1013
0.9
P10809_1033
1.8
P10809_1052
4.0
P10809_1071
2.7
P10809_1093
0.8
P10809_1103
3.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.2
Monaco sample
nTPM
NK-cell nTPM: 4.2
Samples: 4
Max nTPM: 5.2
Min nTPM: 2.9
RHH5316_R3683
5.2
RHH5224_R3596
4.8
RHH5253_R3625
3.8
RHH5282_R3654
2.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.9
Schmiedel sample id
TPM
NK-cell TPM: 48.9
Samples: 90
Max TPM: 125.5
Min TPM: 20.5
NK_1
125.5
NK_2
107.0
NK_3
101.2
NK_4
97.3
NK_5
95.3
NK_6
85.0
NK_7
83.1
NK_8
82.2
NK_9
82.0
NK_10
78.2
NK_11
75.6
NK_12
74.3
NK_13
73.9
NK_14
73.2
NK_15
72.3
NK_16
67.2
NK_17
66.5
NK_18
65.7
NK_19
64.9
NK_20
63.3
NK_21
63.0
NK_22
58.7
NK_23
56.6
NK_24
56.1
NK_25
55.4
NK_26
53.7
NK_27
53.0
NK_28
52.9
NK_29
52.1
NK_30
51.9
NK_31
51.7
NK_32
51.6
NK_33
51.5
NK_34
51.4
NK_35
49.2
NK_36
47.5
NK_37
47.5
NK_38
46.1
NK_39
45.0
NK_40
44.9
NK_41
44.8
NK_42
44.7
NK_43
44.7
NK_44
44.5
NK_45
44.2
NK_46
44.0
NK_47
43.1
NK_48
42.5
NK_49
42.1
NK_50
42.0
NK_51
41.9
NK_52
41.8
NK_53
41.5
NK_54
40.5
NK_55
40.2
NK_56
39.9
NK_57
39.5
NK_58
38.2
NK_59
38.2
NK_60
37.4
NK_61
36.9
NK_62
36.5
NK_63
35.8
NK_64
35.7
NK_65
35.6
NK_66
35.6
NK_67
35.4
NK_68
35.3
NK_69
34.3
NK_70
33.7
NK_71
33.5
NK_72
33.5
NK_73
32.9
NK_74
32.3
NK_75
31.9
NK_76
30.8
NK_77
30.7
NK_78
29.0
NK_79
28.7
NK_80
27.9
NK_81
27.6
NK_82
24.7
NK_83
23.2
NK_84
23.1
NK_85
22.6
NK_86
22.2
NK_87
22.1
NK_88
21.7
NK_89
21.0
NK_90
20.5
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