A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.4
nTPM
Monaco:
8.3
nTPM
Schmiedel:
98.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.4
HPA sample
nTPM
Classical monocyte nTPM: 6.9
Samples: 6
Max nTPM: 10.6
Min nTPM: 2.2
P10809_1003
2.2
P10809_1020
6.1
P10809_1039
8.0
P10809_1058
7.3
P10809_1080
7.4
P10809_1107
10.6
Intermediate monocyte nTPM: 5.4
Samples: 6
Max nTPM: 7.5
Min nTPM: 2.4
P10809_1004
2.4
P10809_1023
6.5
P10809_1042
6.5
P10809_1061
5.8
P10809_1081
3.5
P10809_1108
7.5
Non-classical monocyte nTPM: 7.4
Samples: 5
Max nTPM: 11.5
Min nTPM: 3.4
P10809_1005
3.4
P10809_1053
5.7
P10809_1072
11.5
P10809_1082
5.4
P10809_1109
10.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.3
Monaco sample
nTPM
Classical monocyte nTPM: 8.3
Samples: 4
Max nTPM: 11.7
Min nTPM: 4.8
RHH5313_R3680
11.7
RHH5221_R3593
4.8
RHH5250_R3622
8.5
RHH5279_R3651
8.2
Intermediate monocyte nTPM: 6.2
Samples: 4
Max nTPM: 10.1
Min nTPM: 2.3
RHH5314_R3681
2.3
RHH5222_R3594
7.4
RHH5251_R3623
10.1
RHH5280_R3652
5.0
Non-classical monocyte nTPM: 3.2
Samples: 4
Max nTPM: 4.6
Min nTPM: 1.9
RHH5315_R3682
1.9
RHH5223_R3595
2.0
RHH5252_R3624
4.6
RHH5281_R3653
4.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.8
Schmiedel sample id
TPM
Classical monocyte TPM: 98.8
Samples: 91
Max TPM: 200.8
Min TPM: 50.7
MONOCYTES_1
200.8
MONOCYTES_2
177.1
MONOCYTES_3
170.4
MONOCYTES_4
147.2
MONOCYTES_5
140.7
MONOCYTES_6
140.3
MONOCYTES_7
140.1
MONOCYTES_8
132.8
MONOCYTES_9
132.4
MONOCYTES_10
129.4
MONOCYTES_11
128.3
MONOCYTES_12
127.3
MONOCYTES_13
126.0
MONOCYTES_14
120.2
MONOCYTES_15
119.1
MONOCYTES_16
118.8
MONOCYTES_17
118.0
MONOCYTES_18
117.8
MONOCYTES_19
117.3
MONOCYTES_20
117.3
MONOCYTES_21
115.8
MONOCYTES_22
114.7
MONOCYTES_23
114.2
MONOCYTES_24
114.0
MONOCYTES_25
113.8
MONOCYTES_26
111.4
MONOCYTES_27
111.2
MONOCYTES_28
110.1
MONOCYTES_29
109.4
MONOCYTES_30
109.2
MONOCYTES_31
109.0
MONOCYTES_32
108.3
MONOCYTES_33
107.5
MONOCYTES_34
106.1
MONOCYTES_35
105.5
MONOCYTES_36
104.0
MONOCYTES_37
103.2
MONOCYTES_38
102.6
MONOCYTES_39
102.4
MONOCYTES_40
102.1
MONOCYTES_41
101.5
MONOCYTES_42
100.9
MONOCYTES_43
100.5
MONOCYTES_44
100.3
MONOCYTES_45
99.1
MONOCYTES_46
97.4
MONOCYTES_47
96.3
MONOCYTES_48
95.9
MONOCYTES_49
95.7
MONOCYTES_50
95.1
MONOCYTES_51
94.4
MONOCYTES_52
91.6
MONOCYTES_53
91.1
MONOCYTES_54
91.0
MONOCYTES_55
90.6
MONOCYTES_56
90.5
MONOCYTES_57
90.0
MONOCYTES_58
89.8
MONOCYTES_59
89.3
MONOCYTES_60
89.1
MONOCYTES_61
89.1
MONOCYTES_62
87.4
MONOCYTES_63
86.6
MONOCYTES_64
86.2
MONOCYTES_65
85.9
MONOCYTES_66
84.4
MONOCYTES_67
82.7
MONOCYTES_68
81.9
MONOCYTES_69
81.7
MONOCYTES_70
81.6
MONOCYTES_71
80.4
MONOCYTES_72
79.4
MONOCYTES_73
74.6
MONOCYTES_74
74.5
MONOCYTES_75
70.8
MONOCYTES_76
70.6
MONOCYTES_77
68.4
MONOCYTES_78
68.2
MONOCYTES_79
68.0
MONOCYTES_80
67.6
MONOCYTES_81
67.1
MONOCYTES_82
63.3
MONOCYTES_83
59.5
MONOCYTES_84
58.7
MONOCYTES_85
57.7
MONOCYTES_86
57.6
MONOCYTES_87
57.0
MONOCYTES_88
56.4
MONOCYTES_89
55.4
MONOCYTES_90
53.1
MONOCYTES_91
50.7
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Non-classical monocyte TPM: 45.1
Samples: 90
Max TPM: 100.7
Min TPM: 10.0
M2_1
100.7
M2_2
87.1
M2_3
83.8
M2_4
80.7
M2_5
78.1
M2_6
75.4
M2_7
74.2
M2_8
72.0
M2_9
71.6
M2_10
70.9
M2_11
70.4
M2_12
68.8
M2_13
68.6
M2_14
68.5
M2_15
68.3
M2_16
66.9
M2_17
66.3
M2_18
66.0
M2_19
62.2
M2_20
61.2
M2_21
60.9
M2_22
60.4
M2_23
59.9
M2_24
59.9
M2_25
58.2
M2_26
57.8
M2_27
57.1
M2_28
56.8
M2_29
56.5
M2_30
55.4
M2_31
55.2
M2_32
53.6
M2_33
50.9
M2_34
50.0
M2_35
49.8
M2_36
49.7
M2_37
49.7
M2_38
47.7
M2_39
47.1
M2_40
46.9
M2_41
45.7
M2_42
44.2
M2_43
42.9
M2_44
42.8
M2_45
41.8
M2_46
41.7
M2_47
41.3
M2_48
41.2
M2_49
40.8
M2_50
40.5
M2_51
39.7
M2_52
38.5
M2_53
37.4
M2_54
37.3
M2_55
37.2
M2_56
37.1
M2_57
36.9
M2_58
35.7
M2_59
34.6
M2_60
32.1
M2_61
31.3
M2_62
31.2
M2_63
31.1
M2_64
30.3
M2_65
29.8
M2_66
29.6
M2_67
29.5
M2_68
29.5
M2_69
29.1
M2_70
27.8
M2_71
27.5
M2_72
27.3
M2_73
26.7
M2_74
26.7
M2_75
26.4
M2_76
25.4
M2_77
25.2
M2_78
23.9
M2_79
23.0
M2_80
22.9
M2_81
22.8
M2_82
20.5
M2_83
20.1
M2_84
17.5
M2_85
17.3
M2_86
16.3
M2_87
15.7
M2_88
15.0
M2_89
14.8
M2_90
10.0
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