MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.0 nTPM
HPA Brain:27.0 nTPM
GTEx:40.0 nTPM
FANTOM5:125.2 Scaled Tags Per Million
Pig:80.8 nTPM
Mouse:119.8 nTPM
Allen mouse:3.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.6
1870 Female, age 42, unknown 30.9
2019 Male, age 18, unknown 27.4
1830 Male, age 51, unknown 26.4
2411 Female, age 72, unknown 26.0
1833 Male, age 53, unknown 25.4
2828 Female, age 72, unknown 23.9
1827 Male, age 72, unknown 22.8
2666 Male, age 74, left hemisphere 21.7
2219 Male, age 76, both hemispheres 20.7
2586 Male, age 75, left hemisphere 20.5
Dorsal raphe nucleus
nTPM: 22.2
2750 Male, age 76, both hemispheres 26.7
2016 Female, age 72, unknown 21.9
1828 Male, age 53, unknown 21.7
2298 Female, age 72, unknown 21.5
2047 Male, age 72, unknown 19.0
Inferior colliculus
nTPM: 23.5
2097 Female, age 72, unknown 24.5
1848 Female, age 42, unknown 24.3
1890 Male, age 53, unknown 23.4
2849 Male, age 72, unknown 21.6
Median raphe nucleus
nTPM: 22.0
2220 Male, age 76, midline 22.0
Periaquaductal grey, anterior
nTPM: 22.2
2502 Female, age 75, unknown 23.9
1947 Male, age 18, unknown 23.4
1795 Male, age 51, unknown 19.1
Periaquaductal grey, dorsal
nTPM: 21.3
2850 Male, age 76, both hemispheres 22.8
1831 Male, age 72, unknown 22.5
2464 Female, age 72, unknown 20.6
1840 Male, age 53, unknown 19.2
Periaquaductal grey, lateral
nTPM: 21.2
2053 Male, age 18, unknown 21.9
2272 Male, age 74, both hemispheres 20.9
2140 Male, age 76, both hemispheres 20.8
Pretectal area
nTPM: 24.0
1817 Female, age 42, unknown 29.3
1815 Male, age 53, unknown 27.5
2007 Male, age 72, unknown 25.3
2667 Female, age 75, unknown 24.9
1944 Female, age 72, unknown 24.7
2316 Male, age 76, right hemisphere 23.6
2825 Male, age 18, unknown 22.6
2224 Female, age 72, unknown 22.2
1816 Male, age 51, unknown 22.0
2273 Male, age 74, both hemispheres 22.0
2407 Male, age 75, both hemispheres 19.6
Red nucleus
nTPM: 27.0
1865 Male, age 51, unknown 33.6
1821 Female, age 72, unknown 33.4
1904 Male, age 53, unknown 30.9
1954 Female, age 42, unknown 30.6
2823 Male, age 76, right hemisphere 28.9
2769 Male, age 72, unknown 26.5
2227 Male, age 72, unknown 26.2
2785 Male, age 18, unknown 25.7
2503 Female, age 72, unknown 25.0
2588 Male, age 74, left hemisphere 22.2
2725 Female, age 75, unknown 22.0
2584 Male, age 75, left hemisphere 19.0
Substantia nigra
nTPM: 23.9
1889 Female, age 72, unknown 26.5
1851 Male, age 51, unknown 26.4
2241 Male, age 72, unknown 26.0
2583 Male, age 75, right hemisphere 24.0
2665 Male, age 74, both hemispheres 23.3
2409 Female, age 72, unknown 23.1
2699 Male, age 18, unknown 22.9
2590 Female, age 75, unknown 22.7
1916 Female, age 42, unknown 22.1
1941 Male, age 53, unknown 22.0
Superior colliculus
nTPM: 24.6
1913 Female, age 42, unknown 29.7
1995 Male, age 72, unknown 27.4
2668 Female, age 75, unknown 27.3
2587 Male, age 74, left hemisphere 27.0
1895 Male, age 76, right hemisphere 26.3
1839 Male, age 51, unknown 24.3
2261 Male, age 18, unknown 22.4
1796 Male, age 53, unknown 22.3
2087 Female, age 72, unknown 21.2
2664 Male, age 75, both hemispheres 18.1
Ventral tegmental area
nTPM: 23.4
2223 Female, age 72, unknown 27.5
2410 Female, age 72, unknown 26.5
2218 Male, age 76, both hemispheres 23.6
2021 Male, age 53, unknown 22.1
1915 Female, age 42, unknown 21.6
1942 Male, age 51, unknown 19.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.0
Samples: 183

Max nTPM: 73.5
Min nTPM: 24.8
Std nTPM: 9.2
Median nTPM: 38.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 73.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 71.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 67.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 64.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 62.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 58.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 58.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 58.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 58.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 57.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 56.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 125.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.2
FF:10158-103A5 76 years, female 125.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 80.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.2
Samples: 4

Max nTPM: 92.3
Min nTPM: 61.8
Sample A Female 92.3
Sample B Female 81.0
Sample C Male 61.8
Sample D Male 73.7
Midbrain
nTPM: 76.5
Samples: 4

Max nTPM: 119.7
Min nTPM: 49.5
Sample A Female 119.7
Sample B Female 79.3
Sample C Male 49.5
Sample D Male 57.4
Periaqueductal gray
nTPM: 67.5
Samples: 3

Max nTPM: 68.5
Min nTPM: 65.5
Sample B Female 68.5
Sample C Male 68.5
Sample D Male 65.5
Superior colliculi
nTPM: 80.8
Samples: 4

Max nTPM: 101.4
Min nTPM: 63.4
Sample A Female 94.0
Sample B Female 101.4
Sample C Male 63.4
Sample D Male 64.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 119.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.8
Samples: 4

Max nTPM: 125.3
Min nTPM: 112.6
Sample A Male 125.3
Sample B Male 112.6
Sample C Female 117.8
Sample D Female 123.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
69407505 Antisense, RP_050414_01_G08, Mouse strain C57BL/6J (56 days, male) 3.8

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