On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
23.6
nTPM
HPA Brain:
126.8
nTPM
GTEx:
23.6
nTPM
FANTOM5:
102.7
Scaled Tags Per Million
Macaque:
100.4
nTPM
Mouse:
113.5
nTPM
Rat:
149.9
nTPM
Pig:
204.1
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
126.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 119.7
2586
Male, age 75, left hemisphere
182.5
2666
Male, age 74, left hemisphere
133.2
2828
Female, age 72, unknown
129.4
1827
Male, age 72, unknown
126.1
2019
Male, age 18, unknown
123.4
2219
Male, age 76, both hemispheres
119.8
1870
Female, age 42, unknown
98.9
1833
Male, age 53, unknown
97.8
1830
Male, age 51, unknown
93.4
2411
Female, age 72, unknown
92.1
Dorsal raphe nucleus nTPM: 91.0
2298
Female, age 72, unknown
93.8
2750
Male, age 76, both hemispheres
92.8
1828
Male, age 53, unknown
91.7
2047
Male, age 72, unknown
91.4
2016
Female, age 72, unknown
85.1
Inferior colliculus nTPM: 105.5
1848
Female, age 42, unknown
108.0
2849
Male, age 72, unknown
107.2
2097
Female, age 72, unknown
104.8
1890
Male, age 53, unknown
102.1
Median raphe nucleus nTPM: 91.6
2220
Male, age 76, midline
91.6
Periaquaductal grey, anterior nTPM: 126.8
2502
Female, age 75, unknown
138.6
1795
Male, age 51, unknown
130.9
1947
Male, age 18, unknown
111.0
Periaquaductal grey, dorsal nTPM: 93.4
1840
Male, age 53, unknown
103.8
2464
Female, age 72, unknown
97.2
1831
Male, age 72, unknown
96.3
2850
Male, age 76, both hemispheres
76.2
Periaquaductal grey, lateral nTPM: 83.3
2053
Male, age 18, unknown
96.7
2140
Male, age 76, both hemispheres
77.8
2272
Male, age 74, both hemispheres
75.3
Pretectal area nTPM: 118.1
2007
Male, age 72, unknown
153.2
1816
Male, age 51, unknown
152.9
1817
Female, age 42, unknown
142.4
1944
Female, age 72, unknown
139.3
1815
Male, age 53, unknown
127.6
2407
Male, age 75, both hemispheres
125.0
2667
Female, age 75, unknown
114.3
2825
Male, age 18, unknown
105.0
2224
Female, age 72, unknown
86.1
2316
Male, age 76, right hemisphere
85.0
2273
Male, age 74, both hemispheres
68.3
Red nucleus nTPM: 104.6
2584
Male, age 75, left hemisphere
150.7
2785
Male, age 18, unknown
123.0
2588
Male, age 74, left hemisphere
121.2
2769
Male, age 72, unknown
105.9
1904
Male, age 53, unknown
100.9
2227
Male, age 72, unknown
98.1
1954
Female, age 42, unknown
96.9
2503
Female, age 72, unknown
95.3
1865
Male, age 51, unknown
95.1
2823
Male, age 76, right hemisphere
92.3
1821
Female, age 72, unknown
88.7
2725
Female, age 75, unknown
86.6
Substantia nigra nTPM: 107.0
2665
Male, age 74, both hemispheres
140.1
2583
Male, age 75, right hemisphere
127.8
1889
Female, age 72, unknown
120.8
1916
Female, age 42, unknown
115.7
1851
Male, age 51, unknown
113.0
1941
Male, age 53, unknown
111.0
2590
Female, age 75, unknown
96.1
2241
Male, age 72, unknown
85.9
2699
Male, age 18, unknown
84.7
2409
Female, age 72, unknown
75.1
Superior colliculus nTPM: 119.0
2664
Male, age 75, both hemispheres
173.0
2668
Female, age 75, unknown
139.0
2087
Female, age 72, unknown
130.6
1796
Male, age 53, unknown
126.5
2261
Male, age 18, unknown
122.9
1839
Male, age 51, unknown
106.1
1895
Male, age 76, right hemisphere
103.2
2587
Male, age 74, left hemisphere
98.0
1995
Male, age 72, unknown
96.2
1913
Female, age 42, unknown
94.0
Ventral tegmental area nTPM: 106.6
2223
Female, age 72, unknown
126.4
2218
Male, age 76, both hemispheres
108.6
1942
Male, age 51, unknown
107.1
1915
Female, age 42, unknown
103.4
2410
Female, age 72, unknown
100.4
2021
Male, age 53, unknown
93.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 23.6
Samples: 183
Max nTPM: 114.6
Min nTPM: 10.8
Std nTPM: 9.9
Median nTPM: 22.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
114.6
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
80.1
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
49.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
47.8
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
42.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
37.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
36.6
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
36.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
34.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
34.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
33.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
32.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
32.1
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
31.0
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
30.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
29.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
29.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
29.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
29.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
29.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
28.9
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
28.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
28.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
28.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
28.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
28.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
28.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
28.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
27.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
27.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
27.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
27.4
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
27.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
27.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
27.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
27.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
27.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
26.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
26.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
26.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
26.4
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
25.9
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
25.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
25.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
25.7
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
25.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
25.5
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
25.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
25.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
25.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
25.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
25.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
25.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
25.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
25.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
25.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
25.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
25.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
25.0
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
24.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
24.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
24.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
24.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
24.8
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
24.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
24.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
24.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
24.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
24.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
24.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
24.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
23.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
23.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
23.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
23.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
23.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
23.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
23.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
23.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
23.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
23.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
23.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
23.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
23.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
23.1
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
23.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
23.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
23.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
22.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
22.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
22.8
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
22.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
22.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
22.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
22.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
22.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
22.2
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
22.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
22.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
22.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
22.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
22.0
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
21.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
21.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
21.8
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
21.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
21.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
21.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
21.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
21.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
21.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
21.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
20.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
20.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
20.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
20.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
20.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
20.5
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
20.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
20.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
20.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
20.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
20.1
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
20.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
20.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
20.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
20.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
19.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
19.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
19.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
19.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
19.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
19.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
19.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
19.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
19.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
19.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
18.9
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
18.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
18.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
18.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
18.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
18.6
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
18.5
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
18.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
18.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
18.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
18.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
17.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
17.9
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
17.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
17.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
17.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
17.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
17.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
17.0
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
16.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
16.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
16.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
16.4
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
16.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
16.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
16.0
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
15.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
15.7
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
15.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
15.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
15.2
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
15.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
15.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
14.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
14.6
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
14.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
13.9
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
13.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
12.9
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
12.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
12.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
12.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
11.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
11.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
11.2
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
10.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
100.4
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 52.6
Samples: 1
Max nTPM: 52.6
Min nTPM: 52.6
Sample A
52.6
Midbrain nTPM: 67.7
Samples: 1
Max nTPM: 67.7
Min nTPM: 67.7
Sample A
67.7
Superior colliculi nTPM: 100.4
Samples: 1
Max nTPM: 100.4
Min nTPM: 100.4
Sample A
100.4
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
204.1
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 147.7
Samples: 3
Max nTPM: 167.5
Min nTPM: 127.0
Sample A
Female
167.5
Sample B
Female
127.0
Sample C
Male
148.7
Midbrain nTPM: 204.1
Samples: 3
Max nTPM: 242.2
Min nTPM: 136.9
Sample B
Female
136.9
Sample C
Male
242.2
Sample D
Male
233.2
Periaqueductal gray nTPM: 134.0
Samples: 3
Max nTPM: 142.8
Min nTPM: 129.2
Sample B
Female
130.1
Sample C
Male
142.8
Sample D
Male
129.2
Superior colliculi nTPM: 188.6
Samples: 4
Max nTPM: 222.8
Min nTPM: 130.6
Sample A
Female
200.1
Sample B
Female
130.6
Sample C
Male
201.0
Sample D
Male
222.8
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
113.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 113.5
Samples: 4
Max nTPM: 122.2
Min nTPM: 100.6
Sample A
100.6
Sample B
122.2
Sample C
118.1
Sample D
113.2
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
149.9
Rat sample
Sample description
nTPM
Midbrain nTPM: 149.9
Samples: 4
Max nTPM: 160.2
Min nTPM: 133.2
Sample A
147.7
Sample A
160.2
Sample A
158.3
Sample A
133.2
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The Human Protein Atlas project is funded
