MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.7 nTPM
HPA Brain:96.0 nTPM
GTEx:23.7 nTPM
FANTOM5:88.2 Scaled Tags Per Million
Pig:48.2 nTPM
Mouse:7.6 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 96.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.8
2586 Male, age 75, left hemisphere 113.3
2828 Female, age 72, unknown 103.7
1870 Female, age 42, unknown 93.6
1830 Male, age 51, unknown 93.2
1833 Male, age 53, unknown 90.5
2666 Male, age 74, left hemisphere 86.4
2219 Male, age 76, both hemispheres 82.9
2019 Male, age 18, unknown 81.9
1827 Male, age 72, unknown 79.4
2411 Female, age 72, unknown 73.5
Dorsal raphe nucleus
nTPM: 71.5
2750 Male, age 76, both hemispheres 85.2
2016 Female, age 72, unknown 83.8
1828 Male, age 53, unknown 70.7
2298 Female, age 72, unknown 59.0
2047 Male, age 72, unknown 58.6
Inferior colliculus
nTPM: 70.1
2849 Male, age 72, unknown 86.6
1848 Female, age 42, unknown 74.2
1890 Male, age 53, unknown 68.4
2097 Female, age 72, unknown 51.1
Median raphe nucleus
nTPM: 71.0
2220 Male, age 76, midline 71.0
Periaquaductal grey, anterior
nTPM: 87.6
1795 Male, age 51, unknown 93.5
2502 Female, age 75, unknown 92.4
1947 Male, age 18, unknown 76.8
Periaquaductal grey, dorsal
nTPM: 82.1
1831 Male, age 72, unknown 99.8
2850 Male, age 76, both hemispheres 84.5
2464 Female, age 72, unknown 72.5
1840 Male, age 53, unknown 71.8
Periaquaductal grey, lateral
nTPM: 83.0
2053 Male, age 18, unknown 90.3
2140 Male, age 76, both hemispheres 81.9
2272 Male, age 74, both hemispheres 76.7
Pretectal area
nTPM: 86.5
2667 Female, age 75, unknown 113.1
2407 Male, age 75, both hemispheres 106.6
2316 Male, age 76, right hemisphere 101.3
1815 Male, age 53, unknown 97.9
2273 Male, age 74, both hemispheres 84.1
2825 Male, age 18, unknown 82.5
1817 Female, age 42, unknown 79.5
1816 Male, age 51, unknown 73.5
2224 Female, age 72, unknown 72.3
2007 Male, age 72, unknown 71.5
1944 Female, age 72, unknown 69.3
Red nucleus
nTPM: 92.9
2823 Male, age 76, right hemisphere 110.8
1904 Male, age 53, unknown 99.3
2769 Male, age 72, unknown 98.5
1954 Female, age 42, unknown 96.5
2785 Male, age 18, unknown 95.5
2227 Male, age 72, unknown 93.7
1865 Male, age 51, unknown 93.1
2503 Female, age 72, unknown 89.3
2588 Male, age 74, left hemisphere 88.6
2584 Male, age 75, left hemisphere 85.6
1821 Female, age 72, unknown 84.9
2725 Female, age 75, unknown 78.8
Substantia nigra
nTPM: 76.3
2699 Male, age 18, unknown 105.1
2583 Male, age 75, right hemisphere 91.7
1851 Male, age 51, unknown 85.5
2590 Female, age 75, unknown 83.9
2665 Male, age 74, both hemispheres 72.0
1889 Female, age 72, unknown 71.9
2409 Female, age 72, unknown 71.0
1916 Female, age 42, unknown 66.3
1941 Male, age 53, unknown 61.8
2241 Male, age 72, unknown 53.3
Superior colliculus
nTPM: 96.0
1913 Female, age 42, unknown 129.5
1995 Male, age 72, unknown 127.5
2664 Male, age 75, both hemispheres 120.9
1796 Male, age 53, unknown 96.4
1839 Male, age 51, unknown 93.5
1895 Male, age 76, right hemisphere 91.2
2587 Male, age 74, left hemisphere 82.7
2261 Male, age 18, unknown 75.8
2087 Female, age 72, unknown 72.3
2668 Female, age 75, unknown 69.9
Ventral tegmental area
nTPM: 75.5
2223 Female, age 72, unknown 83.1
2021 Male, age 53, unknown 80.8
2218 Male, age 76, both hemispheres 76.2
1915 Female, age 42, unknown 73.8
2410 Female, age 72, unknown 71.1
1942 Male, age 51, unknown 68.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.7
Samples: 183

Max nTPM: 59.2
Min nTPM: 10.1
Std nTPM: 9.1
Median nTPM: 21.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 59.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 56.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 52.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 47.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 47.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 46.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 46.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 42.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 42.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 40.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 88.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.2
FF:10158-103A5 76 years, female 88.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.2
Samples: 4

Max nTPM: 59.1
Min nTPM: 39.7
Sample A Female 39.7
Sample B Female 47.3
Sample C Male 46.7
Sample D Male 59.1
Midbrain
nTPM: 41.5
Samples: 4

Max nTPM: 59.7
Min nTPM: 32.4
Sample A Female 59.7
Sample B Female 35.0
Sample C Male 39.0
Sample D Male 32.4
Periaqueductal gray
nTPM: 39.9
Samples: 3

Max nTPM: 42.5
Min nTPM: 36.5
Sample B Female 36.5
Sample C Male 42.5
Sample D Male 40.7
Superior colliculi
nTPM: 41.8
Samples: 4

Max nTPM: 44.0
Min nTPM: 38.3
Sample A Female 41.0
Sample B Female 44.0
Sample C Male 38.3
Sample D Male 44.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 8.9
Min nTPM: 6.9
Sample A Male 6.9
Sample B Male 7.7
Sample C Female 7.0
Sample D Female 8.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
77340500 Antisense, RP_070116_02_D10, Mouse strain C57BL/6J (56 days, male) 0.5
71763906 Antisense, RP_050921_02_G12, Mouse strain C57BL/6J (56 days, male) 0.2

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