MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.7 nTPM
HPA Brain:166.1 nTPM
GTEx:86.7 nTPM
FANTOM5:13.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 166.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 131.2
2586 Male, age 75, left hemisphere 155.3
2666 Male, age 74, left hemisphere 146.6
1870 Female, age 42, unknown 136.5
2411 Female, age 72, unknown 134.0
1827 Male, age 72, unknown 132.2
2219 Male, age 76, both hemispheres 127.1
1833 Male, age 53, unknown 124.4
2828 Female, age 72, unknown 122.5
2019 Male, age 18, unknown 116.7
1830 Male, age 51, unknown 116.5
Dorsal raphe nucleus
nTPM: 142.7
2298 Female, age 72, unknown 159.8
2047 Male, age 72, unknown 151.5
1828 Male, age 53, unknown 142.9
2750 Male, age 76, both hemispheres 135.5
2016 Female, age 72, unknown 123.7
Inferior colliculus
nTPM: 121.7
1848 Female, age 42, unknown 126.2
2849 Male, age 72, unknown 122.8
1890 Male, age 53, unknown 120.7
2097 Female, age 72, unknown 117.2
Median raphe nucleus
nTPM: 160.0
2220 Male, age 76, midline 160.0
Periaquaductal grey, anterior
nTPM: 142.2
1947 Male, age 18, unknown 142.5
2502 Female, age 75, unknown 142.3
1795 Male, age 51, unknown 141.9
Periaquaductal grey, dorsal
nTPM: 117.7
1840 Male, age 53, unknown 130.9
2850 Male, age 76, both hemispheres 125.5
2464 Female, age 72, unknown 108.1
1831 Male, age 72, unknown 106.4
Periaquaductal grey, lateral
nTPM: 122.8
2272 Male, age 74, both hemispheres 132.1
2053 Male, age 18, unknown 118.2
2140 Male, age 76, both hemispheres 118.1
Pretectal area
nTPM: 130.9
1944 Female, age 72, unknown 149.9
1816 Male, age 51, unknown 147.0
2007 Male, age 72, unknown 143.8
2224 Female, age 72, unknown 134.7
1817 Female, age 42, unknown 132.3
2667 Female, age 75, unknown 130.0
2825 Male, age 18, unknown 129.3
1815 Male, age 53, unknown 128.9
2407 Male, age 75, both hemispheres 119.3
2273 Male, age 74, both hemispheres 115.7
2316 Male, age 76, right hemisphere 109.0
Red nucleus
nTPM: 130.7
2503 Female, age 72, unknown 149.3
2725 Female, age 75, unknown 141.2
1821 Female, age 72, unknown 136.6
2584 Male, age 75, left hemisphere 135.3
2588 Male, age 74, left hemisphere 133.1
1865 Male, age 51, unknown 129.3
1904 Male, age 53, unknown 128.5
1954 Female, age 42, unknown 127.6
2769 Male, age 72, unknown 127.6
2227 Male, age 72, unknown 125.7
2785 Male, age 18, unknown 124.5
2823 Male, age 76, right hemisphere 109.2
Substantia nigra
nTPM: 166.1
1916 Female, age 42, unknown 237.3
1851 Male, age 51, unknown 183.0
2241 Male, age 72, unknown 181.9
2699 Male, age 18, unknown 176.4
1941 Male, age 53, unknown 164.7
2665 Male, age 74, both hemispheres 161.3
2590 Female, age 75, unknown 149.3
1889 Female, age 72, unknown 148.7
2409 Female, age 72, unknown 130.7
2583 Male, age 75, right hemisphere 127.4
Superior colliculus
nTPM: 124.4
1796 Male, age 53, unknown 142.1
2261 Male, age 18, unknown 140.5
2587 Male, age 74, left hemisphere 132.0
2087 Female, age 72, unknown 127.1
2668 Female, age 75, unknown 125.5
2664 Male, age 75, both hemispheres 124.6
1913 Female, age 42, unknown 116.7
1839 Male, age 51, unknown 116.3
1895 Male, age 76, right hemisphere 110.4
1995 Male, age 72, unknown 108.2
Ventral tegmental area
nTPM: 159.6
1915 Female, age 42, unknown 184.1
2410 Female, age 72, unknown 169.2
2218 Male, age 76, both hemispheres 168.6
1942 Male, age 51, unknown 151.6
2223 Female, age 72, unknown 151.1
2021 Male, age 53, unknown 132.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 86.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.7
Samples: 183

Max nTPM: 186.2
Min nTPM: 35.4
Std nTPM: 26.1
Median nTPM: 83.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 186.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 184.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 164.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 150.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 148.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 143.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 141.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 133.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 132.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 130.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 128.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.5
FF:10158-103A5 76 years, female 13.5

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