We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
167.9
Sample id
Sample description
nTPM
Amygdala nTPM: 167.9
2814
Male, age 76, right hemisphere
324.4
2695
Female, age 67, right hemisphere
154.1
2517
Female, age 94, left hemisphere
128.0
2514
Male, age 75, right hemisphere
118.1
1987
Female, age 91, left hemisphere
114.7
Basal amygdala nTPM: 157.7
1955
Male, age 76, both hemispheres
197.2
2243
Female, age 91, right hemisphere
182.6
2685
Female, age 94, left hemisphere
160.2
2110
Male, age 80, left hemisphere
139.7
2609
Male, age 75, right hemisphere
136.2
2827
Female, age 67, right hemisphere
130.2
Central amygdala nTPM: 164.8
1905
Male, age 76, both hemispheres
284.0
2826
Female, age 94, left hemisphere
177.9
2239
Male, age 80, left hemisphere
143.1
2701
Female, age 91, right hemisphere
122.0
2515
Male, age 75, right hemisphere
96.8
Corticomedial amygdala nTPM: 143.7
2242
Female, age 91, right hemisphere
158.4
2829
Male, age 80, left hemisphere
150.3
2240
Male, age 76, both hemispheres
150.2
2429
Female, age 94, left hemisphere
149.0
2535
Female, age 67, right hemisphere
148.8
2428
Male, age 75, right hemisphere
105.8
Lateral amygdala nTPM: 152.4
1883
Male, age 76, both hemispheres
277.7
2534
Female, age 94, left hemisphere
184.9
2516
Male, age 75, right hemisphere
121.6
2830
Female, age 67, right hemisphere
119.3
2255
Female, age 91, right hemisphere
110.9
2256
Male, age 80, left hemisphere
99.7
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
146.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 146.8
Samples: 181
Max nTPM: 397.1
Min nTPM: 36.5
Std nTPM: 57.3
Median nTPM: 139.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
397.1
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
358.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
342.3
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
321.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
290.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
275.9
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
266.5
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
247.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
232.9
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
230.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
229.5
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
226.4
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
225.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
225.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
219.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
217.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
216.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
215.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
214.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
213.6
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
210.9
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
209.8
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
207.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
207.3
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
205.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
204.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
197.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
197.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
196.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
196.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
193.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
193.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
189.2
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
189.0
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
188.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
188.6
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
187.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
186.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
186.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
185.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
184.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
183.7
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
179.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
179.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
179.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
178.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
177.6
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
176.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
175.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
174.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
172.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
171.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
171.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
171.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
169.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
168.3
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
165.2
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
165.1
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
164.8
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
164.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
163.5
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
163.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
162.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
162.3
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
161.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
160.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
160.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
160.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
159.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
158.3
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
152.8
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
151.2
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
150.6
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
149.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
149.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
148.6
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
148.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
148.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
146.9
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
146.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
145.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
145.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
143.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
142.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
142.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
140.1
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
139.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
139.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
139.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
139.6
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
139.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
139.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
139.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
138.6
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
138.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
138.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
138.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
138.1
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
137.5
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
137.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
136.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
134.5
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
133.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
132.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
132.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
132.0
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
130.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
129.5
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
128.9
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
128.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
126.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
126.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
125.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
124.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
124.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
123.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
122.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
121.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
121.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
120.1
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
119.5
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
119.2
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
118.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
118.2
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
117.9
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
116.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
115.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
113.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
112.9
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
112.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
111.9
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
111.1
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
110.1
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
108.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
107.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
103.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
102.9
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
102.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
102.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
99.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
99.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
99.0
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
98.5
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
98.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
97.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
97.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
97.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
97.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
96.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
94.0
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
93.8
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
93.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
93.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
92.1
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
91.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
90.8
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
87.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
87.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
85.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
85.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
85.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
80.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
78.4
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
77.5
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
77.0
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
76.4
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
76.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
73.4
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
73.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
72.7
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
72.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
68.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
68.4
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
68.3
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
67.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
67.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
59.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
55.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
55.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
54.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
36.5
Show allShow less
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105.6
Pig sample
Sample description
nTPM
Amygdala nTPM: 105.6
Samples: 4
Max nTPM: 159.7
Min nTPM: 72.1
Sample A
Female
159.7
Sample B
Female
72.1
Sample C
Male
96.9
Sample D
Male
93.5
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
265.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 265.5
Samples: 4
Max nTPM: 293.0
Min nTPM: 248.0
Sample A
Male
270.6
Sample B
Male
250.2
Sample C
Female
293.0
Sample D
Female
248.0
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
