CEND1
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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

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  • EVOLUTION

  • CEND1
EVOLUTIONARY AMYGDALA Show tissue menu
BRAIN43 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION
HYPOTHALAMUS INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Protein evolution
Brain
Evolutionary methods
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

98.541
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:146.8 nTPM
HPA Brain:165.0 nTPM
GTEx:146.8 nTPM
FANTOM5:178.4 Scaled Tags Per Million
Mouse:226.1 nTPM
Rat:63.1 nTPM
Pig:105.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA042527
Amygdala mean intensity 98.541
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Nucleus of the lateral olfactory tract -
Basal medial amygdaloid nucleus 86.682
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 74.613
Cortical amygdala 98.541
Central amygdala 74.198
Medial amygdaloid nucleus 75.189

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.0
Sample id Sample description nTPM
Basal amygdala
nTPM: 158.4
1955 Male, age 76, both hemispheres 197.1
2243 Female, age 91, right hemisphere 182.8
2685 Female, age 94, left hemisphere 160.3
2110 Male, age 80, left hemisphere 140.6
2609 Male, age 75, right hemisphere 136.7
2827 Female, age 67, right hemisphere 133.0
Central amygdala
nTPM: 165.0
1905 Male, age 76, both hemispheres 283.9
2826 Female, age 94, left hemisphere 178.0
2239 Male, age 80, left hemisphere 143.9
2701 Female, age 91, right hemisphere 122.2
2515 Male, age 75, right hemisphere 97.2
Corticomedial amygdala
nTPM: 144.5
2242 Female, age 91, right hemisphere 158.5
2535 Female, age 67, right hemisphere 152.0
2829 Male, age 80, left hemisphere 151.2
2240 Male, age 76, both hemispheres 150.2
2429 Female, age 94, left hemisphere 148.9
2428 Male, age 75, right hemisphere 106.1
Lateral amygdala
nTPM: 152.9
1883 Male, age 76, both hemispheres 277.7
2534 Female, age 94, left hemisphere 184.9
2516 Male, age 75, right hemisphere 122.1
2830 Female, age 67, right hemisphere 121.8
2255 Female, age 91, right hemisphere 110.9
2256 Male, age 80, left hemisphere 100.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 146.8
Samples: 181

Max nTPM: 397.1
Min nTPM: 36.5
Std nTPM: 57.3
Median nTPM: 139.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 397.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 358.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 342.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 321.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 290.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 275.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 266.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 247.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 232.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 230.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 229.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 226.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 225.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 225.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 219.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 217.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 216.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 215.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 214.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 213.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 210.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 209.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 207.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 207.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 205.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 204.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 197.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 197.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 196.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 196.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 193.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 193.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 189.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 189.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 188.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 188.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 187.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 186.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 186.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 185.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 184.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 183.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 179.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 179.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 179.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 178.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 177.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 176.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 175.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 174.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 172.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 171.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 171.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 171.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 169.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 168.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 165.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 165.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 164.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 164.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 163.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 163.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 162.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 162.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 161.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 160.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 160.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 160.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 159.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 158.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 152.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 151.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 150.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 149.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 149.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 148.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 148.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 148.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 146.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 146.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 145.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 145.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 143.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 142.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 142.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 140.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 139.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 139.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 139.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 139.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 139.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 139.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 139.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 138.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 138.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 138.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 138.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 138.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 137.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 137.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 136.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 134.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 133.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 132.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 132.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 132.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 130.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 129.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 128.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 128.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 126.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 126.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 125.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 124.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 124.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 123.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 122.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 121.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 121.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 120.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 119.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 119.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 118.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 118.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 117.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 116.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 115.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 113.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 112.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 112.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 111.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 111.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 110.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 108.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 107.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 103.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 102.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 102.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 99.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 99.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 99.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 98.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 98.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 97.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 97.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 97.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 97.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 96.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 94.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 93.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 93.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 93.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 92.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 91.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 90.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 87.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 87.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 85.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 85.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 85.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 80.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 78.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 77.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 77.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 76.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 76.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 73.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 73.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 72.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 72.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 68.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 68.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 68.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 67.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 67.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 59.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 55.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 55.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 54.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 36.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

178.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 178.4
FF:10151-102I7 76 years, female 178.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.8
Pig sample Sample description nTPM
Amygdala
nTPM: 105.8
Samples: 4

Max nTPM: 160.3
Min nTPM: 72.2
Sample A Female 160.3
Sample B Female 72.2
Sample C Male 97.0
Sample D Male 93.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 226.1
Samples: 4

Max nTPM: 254.1
Min nTPM: 207.7
Sample A 220.6
Sample B 207.7
Sample C 254.1
Sample D 222.0

AMYGDALA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.1
Rat sample Sample description nTPM
Amygdala
nTPM: 63.1
Samples: 4

Max nTPM: 68.6
Min nTPM: 48.8
Sample A 68.6
Sample A 68.1
Sample A 67.1
Sample A 48.8

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