MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.9 nTPM
HPA Brain:116.1 nTPM
GTEx:53.9 nTPM
FANTOM5:97.5 Scaled Tags Per Million
Pig:79.4 nTPM
Mouse:16.3 nTPM
Allen mouse:6.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 116.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 112.3
2586 Male, age 75, left hemisphere 207.4
2828 Female, age 72, unknown 128.4
2666 Male, age 74, left hemisphere 121.2
2019 Male, age 18, unknown 102.3
1827 Male, age 72, unknown 101.9
1870 Female, age 42, unknown 101.0
1830 Male, age 51, unknown 95.2
1833 Male, age 53, unknown 94.0
2219 Male, age 76, both hemispheres 88.5
2411 Female, age 72, unknown 83.2
Dorsal raphe nucleus
nTPM: 113.7
2047 Male, age 72, unknown 135.3
1828 Male, age 53, unknown 130.6
2016 Female, age 72, unknown 117.5
2298 Female, age 72, unknown 99.1
2750 Male, age 76, both hemispheres 86.3
Inferior colliculus
nTPM: 88.5
2849 Male, age 72, unknown 98.6
1890 Male, age 53, unknown 94.5
1848 Female, age 42, unknown 91.7
2097 Female, age 72, unknown 69.3
Median raphe nucleus
nTPM: 102.3
2220 Male, age 76, midline 102.3
Periaquaductal grey, anterior
nTPM: 95.4
1795 Male, age 51, unknown 106.8
1947 Male, age 18, unknown 94.2
2502 Female, age 75, unknown 85.1
Periaquaductal grey, dorsal
nTPM: 107.9
2850 Male, age 76, both hemispheres 137.0
1840 Male, age 53, unknown 109.3
1831 Male, age 72, unknown 98.5
2464 Female, age 72, unknown 86.8
Periaquaductal grey, lateral
nTPM: 116.1
2140 Male, age 76, both hemispheres 141.2
2053 Male, age 18, unknown 109.6
2272 Male, age 74, both hemispheres 97.4
Pretectal area
nTPM: 93.5
2407 Male, age 75, both hemispheres 116.7
2825 Male, age 18, unknown 107.6
2224 Female, age 72, unknown 95.3
1817 Female, age 42, unknown 94.7
2273 Male, age 74, both hemispheres 93.5
2316 Male, age 76, right hemisphere 92.9
2007 Male, age 72, unknown 90.7
1815 Male, age 53, unknown 89.1
2667 Female, age 75, unknown 83.0
1944 Female, age 72, unknown 82.9
1816 Male, age 51, unknown 81.7
Red nucleus
nTPM: 105.4
2584 Male, age 75, left hemisphere 148.4
2725 Female, age 75, unknown 121.9
2588 Male, age 74, left hemisphere 111.6
1865 Male, age 51, unknown 107.6
2823 Male, age 76, right hemisphere 104.0
1821 Female, age 72, unknown 100.4
1954 Female, age 42, unknown 98.4
2769 Male, age 72, unknown 98.4
2785 Male, age 18, unknown 97.8
2227 Male, age 72, unknown 94.1
2503 Female, age 72, unknown 91.8
1904 Male, age 53, unknown 90.6
Substantia nigra
nTPM: 100.9
2699 Male, age 18, unknown 127.5
2583 Male, age 75, right hemisphere 126.7
2665 Male, age 74, both hemispheres 114.9
1916 Female, age 42, unknown 103.2
1851 Male, age 51, unknown 101.4
1889 Female, age 72, unknown 94.8
2590 Female, age 75, unknown 92.6
2241 Male, age 72, unknown 91.0
1941 Male, age 53, unknown 87.7
2409 Female, age 72, unknown 68.8
Superior colliculus
nTPM: 96.2
2664 Male, age 75, both hemispheres 131.2
2668 Female, age 75, unknown 108.9
1995 Male, age 72, unknown 105.9
1796 Male, age 53, unknown 102.6
1839 Male, age 51, unknown 98.0
2587 Male, age 74, left hemisphere 95.1
1913 Female, age 42, unknown 90.0
2087 Female, age 72, unknown 83.0
2261 Male, age 18, unknown 76.1
1895 Male, age 76, right hemisphere 71.2
Ventral tegmental area
nTPM: 113.6
2223 Female, age 72, unknown 134.5
2021 Male, age 53, unknown 126.7
1942 Male, age 51, unknown 119.2
1915 Female, age 42, unknown 117.6
2218 Male, age 76, both hemispheres 95.0
2410 Female, age 72, unknown 88.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.9
Samples: 183

Max nTPM: 133.8
Min nTPM: 22.0
Std nTPM: 15.4
Median nTPM: 50.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 133.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 118.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 97.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 94.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 91.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 87.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 86.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 86.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 82.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 82.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 82.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.5
FF:10158-103A5 76 years, female 97.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 79.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.5
Samples: 4

Max nTPM: 85.2
Min nTPM: 74.0
Sample A Female 81.4
Sample B Female 77.2
Sample C Male 74.0
Sample D Male 85.2
Midbrain
nTPM: 71.0
Samples: 4

Max nTPM: 124.7
Min nTPM: 47.1
Sample A Female 124.7
Sample B Female 57.9
Sample C Male 54.4
Sample D Male 47.1
Periaqueductal gray
nTPM: 60.9
Samples: 3

Max nTPM: 70.6
Min nTPM: 56.0
Sample B Female 56.0
Sample C Male 70.6
Sample D Male 56.2
Superior colliculi
nTPM: 64.9
Samples: 4

Max nTPM: 72.4
Min nTPM: 58.1
Sample A Female 72.4
Sample B Female 65.5
Sample C Male 58.1
Sample D Male 63.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 17.1
Min nTPM: 15.1
Sample A Male 15.1
Sample B Male 16.9
Sample C Female 17.1
Sample D Female 15.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
69262288 Antisense, RP_050303_01_F05, Mouse strain C57BL/6J (56 days, male) 6.6

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