A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.2
nTPM
Monaco:
44.2
nTPM
Schmiedel:
86.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.2
HPA sample
nTPM
NK-cell nTPM: 9.2
Samples: 6
Max nTPM: 17.6
Min nTPM: 0.0
P10809_1013
3.5
P10809_1033
9.9
P10809_1052
10.6
P10809_1071
17.6
P10809_1093
0.0
P10809_1103
13.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.2
Monaco sample
nTPM
NK-cell nTPM: 44.2
Samples: 4
Max nTPM: 49.6
Min nTPM: 38.9
RHH5316_R3683
38.9
RHH5224_R3596
49.6
RHH5253_R3625
43.4
RHH5282_R3654
44.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.1
Schmiedel sample id
TPM
NK-cell TPM: 86.1
Samples: 90
Max TPM: 106.2
Min TPM: 56.3
NK_1
106.2
NK_2
102.7
NK_3
99.4
NK_4
99.1
NK_5
98.6
NK_6
98.3
NK_7
97.0
NK_8
95.8
NK_9
95.6
NK_10
94.6
NK_11
94.5
NK_12
93.8
NK_13
93.2
NK_14
92.8
NK_15
92.7
NK_16
92.6
NK_17
92.5
NK_18
92.2
NK_19
92.2
NK_20
92.0
NK_21
91.8
NK_22
91.5
NK_23
91.4
NK_24
90.9
NK_25
90.8
NK_26
90.7
NK_27
90.3
NK_28
90.2
NK_29
89.9
NK_30
89.8
NK_31
89.6
NK_32
89.4
NK_33
88.8
NK_34
88.6
NK_35
88.5
NK_36
88.0
NK_37
87.9
NK_38
87.8
NK_39
87.5
NK_40
87.3
NK_41
87.0
NK_42
87.0
NK_43
86.9
NK_44
86.3
NK_45
86.2
NK_46
85.9
NK_47
85.6
NK_48
85.5
NK_49
85.3
NK_50
85.3
NK_51
85.0
NK_52
84.9
NK_53
84.4
NK_54
83.6
NK_55
83.6
NK_56
83.2
NK_57
83.0
NK_58
82.6
NK_59
82.4
NK_60
82.4
NK_61
82.3
NK_62
82.3
NK_63
81.9
NK_64
81.9
NK_65
81.8
NK_66
81.6
NK_67
81.1
NK_68
80.9
NK_69
80.8
NK_70
80.7
NK_71
80.7
NK_72
80.4
NK_73
80.4
NK_74
80.0
NK_75
80.0
NK_76
80.0
NK_77
79.6
NK_78
79.5
NK_79
79.1
NK_80
79.1
NK_81
78.6
NK_82
78.1
NK_83
76.9
NK_84
76.4
NK_85
76.1
NK_86
75.6
NK_87
73.8
NK_88
73.4
NK_89
69.6
NK_90
56.3
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