A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.5
nTPM
Monaco:
44.1
nTPM
Schmiedel:
61.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.5
HPA sample
nTPM
Classical monocyte nTPM: 10.4
Samples: 6
Max nTPM: 15.8
Min nTPM: 4.6
P10809_1003
4.6
P10809_1020
11.2
P10809_1039
12.8
P10809_1058
15.8
P10809_1080
7.9
P10809_1107
10.0
Intermediate monocyte nTPM: 10.5
Samples: 6
Max nTPM: 15.1
Min nTPM: 6.7
P10809_1004
6.7
P10809_1023
15.1
P10809_1042
12.3
P10809_1061
10.3
P10809_1081
8.5
P10809_1108
10.3
Non-classical monocyte nTPM: 8.3
Samples: 5
Max nTPM: 13.9
Min nTPM: 0.1
P10809_1005
7.8
P10809_1053
7.0
P10809_1072
0.1
P10809_1082
12.8
P10809_1109
13.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.1
Monaco sample
nTPM
Classical monocyte nTPM: 32.4
Samples: 4
Max nTPM: 37.4
Min nTPM: 24.6
RHH5313_R3680
32.3
RHH5221_R3593
37.4
RHH5250_R3622
35.2
RHH5279_R3651
24.6
Intermediate monocyte nTPM: 44.0
Samples: 4
Max nTPM: 54.8
Min nTPM: 33.5
RHH5314_R3681
39.8
RHH5222_R3594
33.5
RHH5251_R3623
48.0
RHH5280_R3652
54.8
Non-classical monocyte nTPM: 32.6
Samples: 4
Max nTPM: 39.8
Min nTPM: 27.2
RHH5315_R3682
33.3
RHH5223_R3595
27.2
RHH5252_R3624
39.8
RHH5281_R3653
30.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.3
Schmiedel sample id
TPM
Classical monocyte TPM: 43.1
Samples: 91
Max TPM: 54.7
Min TPM: 31.1
MONOCYTES_1
54.7
MONOCYTES_2
53.5
MONOCYTES_3
52.0
MONOCYTES_4
51.3
MONOCYTES_5
50.8
MONOCYTES_6
50.0
MONOCYTES_7
49.9
MONOCYTES_8
49.8
MONOCYTES_9
49.1
MONOCYTES_10
48.9
MONOCYTES_11
48.3
MONOCYTES_12
48.0
MONOCYTES_13
47.7
MONOCYTES_14
47.2
MONOCYTES_15
46.9
MONOCYTES_16
46.6
MONOCYTES_17
46.5
MONOCYTES_18
46.5
MONOCYTES_19
46.2
MONOCYTES_20
45.9
MONOCYTES_21
45.8
MONOCYTES_22
45.8
MONOCYTES_23
45.6
MONOCYTES_24
45.6
MONOCYTES_25
45.3
MONOCYTES_26
45.3
MONOCYTES_27
45.2
MONOCYTES_28
45.1
MONOCYTES_29
45.0
MONOCYTES_30
44.9
MONOCYTES_31
44.7
MONOCYTES_32
44.6
MONOCYTES_33
44.6
MONOCYTES_34
44.5
MONOCYTES_35
44.2
MONOCYTES_36
44.2
MONOCYTES_37
44.2
MONOCYTES_38
44.2
MONOCYTES_39
44.0
MONOCYTES_40
44.0
MONOCYTES_41
43.9
MONOCYTES_42
43.8
MONOCYTES_43
43.7
MONOCYTES_44
43.2
MONOCYTES_45
43.1
MONOCYTES_46
43.0
MONOCYTES_47
42.8
MONOCYTES_48
42.7
MONOCYTES_49
42.5
MONOCYTES_50
42.3
MONOCYTES_51
42.2
MONOCYTES_52
42.1
MONOCYTES_53
41.9
MONOCYTES_54
41.9
MONOCYTES_55
41.8
MONOCYTES_56
41.6
MONOCYTES_57
41.6
MONOCYTES_58
41.5
MONOCYTES_59
41.4
MONOCYTES_60
41.4
MONOCYTES_61
41.4
MONOCYTES_62
41.4
MONOCYTES_63
41.0
MONOCYTES_64
41.0
MONOCYTES_65
40.9
MONOCYTES_66
40.9
MONOCYTES_67
40.6
MONOCYTES_68
40.4
MONOCYTES_69
40.4
MONOCYTES_70
40.4
MONOCYTES_71
40.3
MONOCYTES_72
40.3
MONOCYTES_73
40.2
MONOCYTES_74
39.9
MONOCYTES_75
39.4
MONOCYTES_76
39.3
MONOCYTES_77
38.5
MONOCYTES_78
38.3
MONOCYTES_79
38.2
MONOCYTES_80
38.1
MONOCYTES_81
37.9
MONOCYTES_82
37.7
MONOCYTES_83
37.4
MONOCYTES_84
37.4
MONOCYTES_85
37.1
MONOCYTES_86
36.9
MONOCYTES_87
36.1
MONOCYTES_88
34.5
MONOCYTES_89
34.5
MONOCYTES_90
33.3
MONOCYTES_91
31.1
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Non-classical monocyte TPM: 61.3
Samples: 90
Max TPM: 72.4
Min TPM: 44.5
M2_1
72.4
M2_2
72.3
M2_3
70.2
M2_4
69.9
M2_5
69.9
M2_6
69.1
M2_7
69.0
M2_8
68.5
M2_9
68.0
M2_10
67.8
M2_11
67.5
M2_12
67.4
M2_13
66.9
M2_14
66.4
M2_15
65.9
M2_16
65.9
M2_17
65.7
M2_18
65.5
M2_19
65.2
M2_20
64.9
M2_21
64.5
M2_22
64.5
M2_23
64.1
M2_24
63.8
M2_25
63.8
M2_26
63.7
M2_27
63.6
M2_28
63.4
M2_29
63.3
M2_30
63.0
M2_31
62.9
M2_32
62.8
M2_33
62.8
M2_34
62.6
M2_35
62.5
M2_36
62.5
M2_37
62.4
M2_38
62.2
M2_39
62.2
M2_40
62.2
M2_41
62.0
M2_42
61.9
M2_43
61.8
M2_44
61.7
M2_45
61.5
M2_46
61.4
M2_47
61.2
M2_48
61.1
M2_49
61.1
M2_50
61.0
M2_51
61.0
M2_52
60.9
M2_53
60.3
M2_54
60.3
M2_55
60.2
M2_56
60.2
M2_57
59.9
M2_58
59.8
M2_59
59.6
M2_60
59.4
M2_61
59.2
M2_62
59.2
M2_63
58.9
M2_64
58.8
M2_65
58.7
M2_66
58.7
M2_67
58.6
M2_68
58.5
M2_69
58.3
M2_70
58.0
M2_71
57.9
M2_72
57.7
M2_73
57.4
M2_74
57.4
M2_75
56.8
M2_76
56.6
M2_77
56.3
M2_78
56.2
M2_79
56.1
M2_80
55.9
M2_81
55.8
M2_82
55.5
M2_83
54.9
M2_84
54.8
M2_85
54.2
M2_86
53.6
M2_87
53.2
M2_88
50.9
M2_89
50.5
M2_90
44.5
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