MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.2 nTPM
HPA Brain:42.9 nTPM
GTEx:108.2 nTPM
FANTOM5:179.0 Scaled Tags Per Million
Pig:14.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.7
1870 Female, age 42, unknown 37.7
2411 Female, age 72, unknown 36.1
2019 Male, age 18, unknown 34.5
1830 Male, age 51, unknown 34.1
2828 Female, age 72, unknown 33.3
1827 Male, age 72, unknown 33.0
1833 Male, age 53, unknown 31.4
2219 Male, age 76, both hemispheres 27.9
2666 Male, age 74, left hemisphere 22.7
2586 Male, age 75, left hemisphere 16.7
Dorsal raphe nucleus
nTPM: 42.9
2298 Female, age 72, unknown 50.7
2016 Female, age 72, unknown 43.0
2750 Male, age 76, both hemispheres 42.3
1828 Male, age 53, unknown 39.9
2047 Male, age 72, unknown 38.4
Inferior colliculus
nTPM: 36.8
2097 Female, age 72, unknown 40.5
1848 Female, age 42, unknown 38.7
1890 Male, age 53, unknown 36.8
2849 Male, age 72, unknown 31.1
Median raphe nucleus
nTPM: 38.7
2220 Male, age 76, midline 38.7
Periaquaductal grey, anterior
nTPM: 40.0
1947 Male, age 18, unknown 46.1
2502 Female, age 75, unknown 41.8
1795 Male, age 51, unknown 32.0
Periaquaductal grey, dorsal
nTPM: 38.0
2850 Male, age 76, both hemispheres 43.0
2464 Female, age 72, unknown 40.7
1840 Male, age 53, unknown 38.1
1831 Male, age 72, unknown 30.5
Periaquaductal grey, lateral
nTPM: 37.6
2272 Male, age 74, both hemispheres 41.4
2140 Male, age 76, both hemispheres 37.4
2053 Male, age 18, unknown 33.8
Pretectal area
nTPM: 36.4
2224 Female, age 72, unknown 47.5
2273 Male, age 74, both hemispheres 43.7
2316 Male, age 76, right hemisphere 41.5
1944 Female, age 72, unknown 37.2
2825 Male, age 18, unknown 37.2
1816 Male, age 51, unknown 35.6
2667 Female, age 75, unknown 34.6
1815 Male, age 53, unknown 34.1
1817 Female, age 42, unknown 31.8
2007 Male, age 72, unknown 31.5
2407 Male, age 75, both hemispheres 26.3
Red nucleus
nTPM: 33.5
1821 Female, age 72, unknown 44.1
2503 Female, age 72, unknown 38.9
1865 Male, age 51, unknown 36.8
1904 Male, age 53, unknown 36.7
1954 Female, age 42, unknown 36.3
2725 Female, age 75, unknown 35.5
2823 Male, age 76, right hemisphere 35.5
2227 Male, age 72, unknown 34.7
2769 Male, age 72, unknown 33.9
2785 Male, age 18, unknown 24.2
2588 Male, age 74, left hemisphere 23.7
2584 Male, age 75, left hemisphere 21.3
Substantia nigra
nTPM: 39.6
2241 Male, age 72, unknown 53.9
1916 Female, age 42, unknown 47.4
1851 Male, age 51, unknown 45.1
2699 Male, age 18, unknown 42.4
1889 Female, age 72, unknown 41.9
1941 Male, age 53, unknown 37.6
2409 Female, age 72, unknown 36.8
2590 Female, age 75, unknown 33.8
2665 Male, age 74, both hemispheres 32.3
2583 Male, age 75, right hemisphere 24.4
Superior colliculus
nTPM: 33.9
1913 Female, age 42, unknown 38.5
1895 Male, age 76, right hemisphere 38.4
2087 Female, age 72, unknown 38.2
1995 Male, age 72, unknown 37.0
2668 Female, age 75, unknown 34.9
1796 Male, age 53, unknown 34.6
2261 Male, age 18, unknown 33.0
2587 Male, age 74, left hemisphere 32.8
1839 Male, age 51, unknown 30.9
2664 Male, age 75, both hemispheres 21.4
Ventral tegmental area
nTPM: 38.8
2410 Female, age 72, unknown 44.9
1915 Female, age 42, unknown 42.6
2223 Female, age 72, unknown 38.8
2021 Male, age 53, unknown 36.8
1942 Male, age 51, unknown 35.3
2218 Male, age 76, both hemispheres 34.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 108.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.2
Samples: 183

Max nTPM: 259.8
Min nTPM: 43.6
Std nTPM: 36.9
Median nTPM: 101.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 259.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 228.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 222.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 219.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 200.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 198.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 186.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 183.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 181.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 180.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 173.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 179.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 179.0
FF:10158-103A5 76 years, female 179.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.7
Samples: 4

Max nTPM: 16.8
Min nTPM: 12.9
Sample A Female 12.9
Sample B Female 14.6
Sample C Male 14.3
Sample D Male 16.8
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 14.7
Min nTPM: 12.5
Sample A Female 13.9
Sample B Female 14.7
Sample C Male 13.9
Sample D Male 12.5
Periaqueductal gray
nTPM: 14.0
Samples: 3

Max nTPM: 14.9
Min nTPM: 13.2
Sample B Female 13.8
Sample C Male 13.2
Sample D Male 14.9
Superior colliculi
nTPM: 13.6
Samples: 4

Max nTPM: 15.9
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 15.9
Sample C Male 15.0
Sample D Male 13.2

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