MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.5 nTPM
HPA Brain:124.6 nTPM
GTEx:7.5 nTPM
FANTOM5:96.3 Scaled Tags Per Million
Pig:32.8 nTPM
Mouse:33.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 124.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 124.0
2586 Male, age 75, left hemisphere 175.3
2666 Male, age 74, left hemisphere 149.5
1827 Male, age 72, unknown 130.4
2828 Female, age 72, unknown 127.8
1833 Male, age 53, unknown 119.6
1830 Male, age 51, unknown 114.0
1870 Female, age 42, unknown 107.9
2219 Male, age 76, both hemispheres 106.3
2019 Male, age 18, unknown 105.4
2411 Female, age 72, unknown 103.5
Dorsal raphe nucleus
nTPM: 109.7
2047 Male, age 72, unknown 116.7
2016 Female, age 72, unknown 115.1
1828 Male, age 53, unknown 112.2
2750 Male, age 76, both hemispheres 107.7
2298 Female, age 72, unknown 97.0
Inferior colliculus
nTPM: 111.2
2849 Male, age 72, unknown 130.1
1890 Male, age 53, unknown 107.4
1848 Female, age 42, unknown 107.2
2097 Female, age 72, unknown 99.9
Median raphe nucleus
nTPM: 115.7
2220 Male, age 76, midline 115.7
Periaquaductal grey, anterior
nTPM: 124.6
2502 Female, age 75, unknown 136.6
1947 Male, age 18, unknown 120.6
1795 Male, age 51, unknown 116.7
Periaquaductal grey, dorsal
nTPM: 112.2
2850 Male, age 76, both hemispheres 116.9
1840 Male, age 53, unknown 113.3
1831 Male, age 72, unknown 110.8
2464 Female, age 72, unknown 107.8
Periaquaductal grey, lateral
nTPM: 105.5
2140 Male, age 76, both hemispheres 109.7
2053 Male, age 18, unknown 109.5
2272 Male, age 74, both hemispheres 97.5
Pretectal area
nTPM: 110.0
1816 Male, age 51, unknown 124.4
2007 Male, age 72, unknown 118.3
2407 Male, age 75, both hemispheres 116.3
2825 Male, age 18, unknown 116.1
1817 Female, age 42, unknown 113.2
1815 Male, age 53, unknown 112.3
1944 Female, age 72, unknown 109.1
2316 Male, age 76, right hemisphere 109.0
2224 Female, age 72, unknown 102.1
2273 Male, age 74, both hemispheres 97.9
2667 Female, age 75, unknown 91.3
Red nucleus
nTPM: 119.6
2503 Female, age 72, unknown 139.0
2588 Male, age 74, left hemisphere 139.0
2725 Female, age 75, unknown 130.2
2584 Male, age 75, left hemisphere 128.0
2769 Male, age 72, unknown 118.8
2227 Male, age 72, unknown 115.5
2785 Male, age 18, unknown 115.4
1821 Female, age 72, unknown 113.5
1954 Female, age 42, unknown 113.4
1904 Male, age 53, unknown 111.1
2823 Male, age 76, right hemisphere 107.0
1865 Male, age 51, unknown 103.7
Substantia nigra
nTPM: 108.8
2665 Male, age 74, both hemispheres 133.3
1941 Male, age 53, unknown 121.1
2699 Male, age 18, unknown 120.8
2583 Male, age 75, right hemisphere 119.2
1916 Female, age 42, unknown 113.5
1889 Female, age 72, unknown 105.4
1851 Male, age 51, unknown 103.2
2590 Female, age 75, unknown 95.2
2241 Male, age 72, unknown 94.9
2409 Female, age 72, unknown 81.5
Superior colliculus
nTPM: 116.3
2664 Male, age 75, both hemispheres 155.6
2668 Female, age 75, unknown 130.2
1839 Male, age 51, unknown 124.2
2587 Male, age 74, left hemisphere 120.9
2261 Male, age 18, unknown 115.3
1796 Male, age 53, unknown 114.2
2087 Female, age 72, unknown 106.5
1913 Female, age 42, unknown 105.8
1895 Male, age 76, right hemisphere 95.8
1995 Male, age 72, unknown 94.8
Ventral tegmental area
nTPM: 107.1
1942 Male, age 51, unknown 119.4
2218 Male, age 76, both hemispheres 112.1
2223 Female, age 72, unknown 108.2
1915 Female, age 42, unknown 106.7
2021 Male, age 53, unknown 101.9
2410 Female, age 72, unknown 94.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.5
Samples: 183

Max nTPM: 13.7
Min nTPM: 3.7
Std nTPM: 1.9
Median nTPM: 7.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 13.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 13.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 13.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 13.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 12.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 12.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 12.2
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 12.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 11.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 11.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 11.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.3
FF:10158-103A5 76 years, female 96.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.0
Samples: 4

Max nTPM: 36.0
Min nTPM: 26.4
Sample A Female 32.7
Sample B Female 26.4
Sample C Male 36.0
Sample D Male 28.7
Midbrain
nTPM: 32.8
Samples: 4

Max nTPM: 35.6
Min nTPM: 31.1
Sample A Female 35.6
Sample B Female 31.1
Sample C Male 32.6
Sample D Male 31.8
Periaqueductal gray
nTPM: 30.8
Samples: 3

Max nTPM: 34.6
Min nTPM: 26.8
Sample B Female 34.6
Sample C Male 31.0
Sample D Male 26.8
Superior colliculi
nTPM: 30.4
Samples: 4

Max nTPM: 33.0
Min nTPM: 23.3
Sample A Female 33.0
Sample B Female 23.3
Sample C Male 32.1
Sample D Male 33.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.1
Samples: 4

Max nTPM: 37.0
Min nTPM: 26.7
Sample A Male 26.7
Sample B Male 37.0
Sample C Female 33.6
Sample D Female 35.0

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