MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.0 nTPM
HPA Brain:200.7 nTPM
GTEx:27.0 nTPM
FANTOM5:70.4 Scaled Tags Per Million
Pig:164.4 nTPM
Mouse:137.4 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 200.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 156.1
1827 Male, age 72, unknown 179.8
2828 Female, age 72, unknown 178.5
2586 Male, age 75, left hemisphere 165.1
2219 Male, age 76, both hemispheres 160.9
2666 Male, age 74, left hemisphere 159.5
2411 Female, age 72, unknown 152.3
2019 Male, age 18, unknown 148.9
1833 Male, age 53, unknown 147.8
1830 Male, age 51, unknown 137.3
1870 Female, age 42, unknown 130.5
Dorsal raphe nucleus
nTPM: 161.6
1828 Male, age 53, unknown 172.5
2047 Male, age 72, unknown 170.6
2298 Female, age 72, unknown 164.3
2016 Female, age 72, unknown 155.8
2750 Male, age 76, both hemispheres 144.8
Inferior colliculus
nTPM: 184.7
2097 Female, age 72, unknown 189.9
1848 Female, age 42, unknown 185.2
2849 Male, age 72, unknown 183.6
1890 Male, age 53, unknown 179.9
Median raphe nucleus
nTPM: 168.0
2220 Male, age 76, midline 168.0
Periaquaductal grey, anterior
nTPM: 200.7
1947 Male, age 18, unknown 249.3
1795 Male, age 51, unknown 186.6
2502 Female, age 75, unknown 166.2
Periaquaductal grey, dorsal
nTPM: 187.5
1840 Male, age 53, unknown 215.2
2850 Male, age 76, both hemispheres 191.9
2464 Female, age 72, unknown 177.7
1831 Male, age 72, unknown 165.3
Periaquaductal grey, lateral
nTPM: 169.7
2140 Male, age 76, both hemispheres 189.0
2053 Male, age 18, unknown 176.8
2272 Male, age 74, both hemispheres 143.3
Pretectal area
nTPM: 200.3
1944 Female, age 72, unknown 279.8
1816 Male, age 51, unknown 256.5
2667 Female, age 75, unknown 234.9
1817 Female, age 42, unknown 208.5
2007 Male, age 72, unknown 187.3
1815 Male, age 53, unknown 184.7
2825 Male, age 18, unknown 181.2
2224 Female, age 72, unknown 180.8
2273 Male, age 74, both hemispheres 165.6
2407 Male, age 75, both hemispheres 164.0
2316 Male, age 76, right hemisphere 159.5
Red nucleus
nTPM: 162.9
1821 Female, age 72, unknown 193.8
2725 Female, age 75, unknown 178.8
2503 Female, age 72, unknown 176.9
2588 Male, age 74, left hemisphere 171.8
2823 Male, age 76, right hemisphere 166.6
1954 Female, age 42, unknown 164.7
1865 Male, age 51, unknown 158.1
1904 Male, age 53, unknown 151.6
2584 Male, age 75, left hemisphere 150.3
2769 Male, age 72, unknown 148.2
2785 Male, age 18, unknown 146.9
2227 Male, age 72, unknown 146.5
Substantia nigra
nTPM: 186.1
2241 Male, age 72, unknown 238.8
1889 Female, age 72, unknown 221.3
1916 Female, age 42, unknown 204.6
1941 Male, age 53, unknown 200.9
1851 Male, age 51, unknown 182.4
2665 Male, age 74, both hemispheres 179.8
2409 Female, age 72, unknown 178.4
2590 Female, age 75, unknown 164.2
2699 Male, age 18, unknown 145.8
2583 Male, age 75, right hemisphere 145.1
Superior colliculus
nTPM: 179.0
2087 Female, age 72, unknown 246.8
2261 Male, age 18, unknown 211.3
1895 Male, age 76, right hemisphere 184.3
2668 Female, age 75, unknown 179.5
1913 Female, age 42, unknown 165.5
2664 Male, age 75, both hemispheres 162.2
1796 Male, age 53, unknown 160.9
1995 Male, age 72, unknown 160.9
2587 Male, age 74, left hemisphere 159.7
1839 Male, age 51, unknown 158.7
Ventral tegmental area
nTPM: 165.0
2410 Female, age 72, unknown 178.5
1915 Female, age 42, unknown 178.1
1942 Male, age 51, unknown 174.7
2021 Male, age 53, unknown 165.1
2218 Male, age 76, both hemispheres 154.9
2223 Female, age 72, unknown 138.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.0
Samples: 183

Max nTPM: 55.7
Min nTPM: 5.1
Std nTPM: 9.1
Median nTPM: 25.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 55.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 55.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 48.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 47.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 46.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 45.8
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 45.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 44.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 44.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 43.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 43.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 70.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.4
FF:10158-103A5 76 years, female 70.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 164.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 125.0
Samples: 4

Max nTPM: 176.4
Min nTPM: 87.5
Sample A Female 138.1
Sample B Female 97.8
Sample C Male 176.4
Sample D Male 87.5
Midbrain
nTPM: 160.4
Samples: 4

Max nTPM: 275.6
Min nTPM: 98.3
Sample A Female 98.3
Sample B Female 102.9
Sample C Male 275.6
Sample D Male 164.9
Periaqueductal gray
nTPM: 129.0
Samples: 3

Max nTPM: 164.9
Min nTPM: 107.0
Sample B Female 107.0
Sample C Male 164.9
Sample D Male 115.1
Superior colliculi
nTPM: 164.5
Samples: 4

Max nTPM: 251.9
Min nTPM: 94.2
Sample A Female 129.4
Sample B Female 94.2
Sample C Male 251.9
Sample D Male 182.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 137.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.4
Samples: 4

Max nTPM: 144.9
Min nTPM: 123.7
Sample A Male 123.7
Sample B Male 144.9
Sample C Female 140.6
Sample D Female 140.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
626 Antisense, RP_Baylor_103406, Mouse strain C57BL/6J (56 days, male) 0.9
625 Antisense, RP_Baylor_103406, Mouse strain C57BL/6J (56 days, male) 0.4

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