MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.6 nTPM
HPA Brain:27.2 nTPM
GTEx:22.6 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:25.8 nTPM
Mouse:96.4 nTPM
Allen mouse:8.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.0
2219 Male, age 76, both hemispheres 24.3
2411 Female, age 72, unknown 24.0
1870 Female, age 42, unknown 23.6
2019 Male, age 18, unknown 22.7
1827 Male, age 72, unknown 22.3
1833 Male, age 53, unknown 20.6
2828 Female, age 72, unknown 19.1
1830 Male, age 51, unknown 19.0
2666 Male, age 74, left hemisphere 18.1
2586 Male, age 75, left hemisphere 16.3
Dorsal raphe nucleus
nTPM: 25.1
2298 Female, age 72, unknown 30.5
2750 Male, age 76, both hemispheres 24.8
1828 Male, age 53, unknown 24.4
2047 Male, age 72, unknown 24.4
2016 Female, age 72, unknown 21.3
Inferior colliculus
nTPM: 21.6
2097 Female, age 72, unknown 23.6
1848 Female, age 42, unknown 22.3
1890 Male, age 53, unknown 22.0
2849 Male, age 72, unknown 18.5
Median raphe nucleus
nTPM: 24.9
2220 Male, age 76, midline 24.9
Periaquaductal grey, anterior
nTPM: 22.1
1947 Male, age 18, unknown 24.3
2502 Female, age 75, unknown 21.1
1795 Male, age 51, unknown 20.8
Periaquaductal grey, dorsal
nTPM: 19.9
1840 Male, age 53, unknown 22.3
2464 Female, age 72, unknown 20.4
2850 Male, age 76, both hemispheres 18.6
1831 Male, age 72, unknown 18.4
Periaquaductal grey, lateral
nTPM: 19.7
2272 Male, age 74, both hemispheres 21.6
2053 Male, age 18, unknown 19.2
2140 Male, age 76, both hemispheres 18.1
Pretectal area
nTPM: 23.3
2273 Male, age 74, both hemispheres 26.0
2007 Male, age 72, unknown 25.7
1816 Male, age 51, unknown 25.6
2667 Female, age 75, unknown 25.3
2224 Female, age 72, unknown 25.1
1817 Female, age 42, unknown 24.3
1944 Female, age 72, unknown 23.2
1815 Male, age 53, unknown 22.1
2825 Male, age 18, unknown 20.3
2407 Male, age 75, both hemispheres 19.6
2316 Male, age 76, right hemisphere 19.2
Red nucleus
nTPM: 21.4
1821 Female, age 72, unknown 28.0
2725 Female, age 75, unknown 23.1
2503 Female, age 72, unknown 22.9
1865 Male, age 51, unknown 21.3
1904 Male, age 53, unknown 21.3
2769 Male, age 72, unknown 21.3
2823 Male, age 76, right hemisphere 21.1
1954 Female, age 42, unknown 20.8
2227 Male, age 72, unknown 20.8
2785 Male, age 18, unknown 20.6
2588 Male, age 74, left hemisphere 19.3
2584 Male, age 75, left hemisphere 16.0
Substantia nigra
nTPM: 27.2
1916 Female, age 42, unknown 40.3
2241 Male, age 72, unknown 34.5
1851 Male, age 51, unknown 31.4
1941 Male, age 53, unknown 28.3
1889 Female, age 72, unknown 27.0
2409 Female, age 72, unknown 24.7
2699 Male, age 18, unknown 23.8
2590 Female, age 75, unknown 22.1
2665 Male, age 74, both hemispheres 21.6
2583 Male, age 75, right hemisphere 18.8
Superior colliculus
nTPM: 21.2
1895 Male, age 76, right hemisphere 24.6
2261 Male, age 18, unknown 23.5
2587 Male, age 74, left hemisphere 22.8
2668 Female, age 75, unknown 22.3
1796 Male, age 53, unknown 22.1
2087 Female, age 72, unknown 21.7
1839 Male, age 51, unknown 20.6
1913 Female, age 42, unknown 19.2
1995 Male, age 72, unknown 17.7
2664 Male, age 75, both hemispheres 17.6
Ventral tegmental area
nTPM: 24.9
2410 Female, age 72, unknown 29.7
1915 Female, age 42, unknown 29.0
2218 Male, age 76, both hemispheres 25.1
1942 Male, age 51, unknown 22.3
2223 Female, age 72, unknown 22.2
2021 Male, age 53, unknown 20.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.6
Samples: 183

Max nTPM: 44.3
Min nTPM: 13.2
Std nTPM: 5.5
Median nTPM: 21.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 44.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 42.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 41.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 38.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 37.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 35.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 34.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 34.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 33.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 33.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.1
FF:10158-103A5 76 years, female 32.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.8
Samples: 4

Max nTPM: 27.9
Min nTPM: 24.4
Sample A Female 25.9
Sample B Female 24.4
Sample C Male 25.1
Sample D Male 27.9
Midbrain
nTPM: 25.1
Samples: 4

Max nTPM: 28.4
Min nTPM: 22.2
Sample A Female 28.4
Sample B Female 25.1
Sample C Male 22.2
Sample D Male 24.5
Periaqueductal gray
nTPM: 24.7
Samples: 3

Max nTPM: 25.1
Min nTPM: 24.1
Sample B Female 25.1
Sample C Male 24.1
Sample D Male 25.0
Superior colliculi
nTPM: 23.6
Samples: 4

Max nTPM: 24.2
Min nTPM: 22.6
Sample A Female 24.1
Sample B Female 22.6
Sample C Male 24.2
Sample D Male 23.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 96.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.4
Samples: 4

Max nTPM: 102.0
Min nTPM: 91.7
Sample A Male 102.0
Sample B Male 93.7
Sample C Female 91.7
Sample D Female 98.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.4
68861649 Antisense, RP_050224_02_F09, Mouse strain C57BL/6J (56 days, male) 8.4

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