MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.3 nTPM
HPA Brain:33.4 nTPM
GTEx:14.3 nTPM
FANTOM5:7.1 Scaled Tags Per Million
Pig:48.8 nTPM
Mouse:73.3 nTPM
Allen mouse:2.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.5
2219 Male, age 76, both hemispheres 27.0
1827 Male, age 72, unknown 19.4
2411 Female, age 72, unknown 18.8
2019 Male, age 18, unknown 16.6
1833 Male, age 53, unknown 15.6
2828 Female, age 72, unknown 15.2
1870 Female, age 42, unknown 15.1
2666 Male, age 74, left hemisphere 13.5
2586 Male, age 75, left hemisphere 13.1
1830 Male, age 51, unknown 11.0
Dorsal raphe nucleus
nTPM: 16.0
2298 Female, age 72, unknown 22.2
1828 Male, age 53, unknown 15.7
2047 Male, age 72, unknown 15.6
2750 Male, age 76, both hemispheres 14.6
2016 Female, age 72, unknown 11.9
Inferior colliculus
nTPM: 16.6
2097 Female, age 72, unknown 22.6
1848 Female, age 42, unknown 17.3
2849 Male, age 72, unknown 14.5
1890 Male, age 53, unknown 11.9
Median raphe nucleus
nTPM: 29.0
2220 Male, age 76, midline 29.0
Periaquaductal grey, anterior
nTPM: 24.4
1947 Male, age 18, unknown 28.4
2502 Female, age 75, unknown 23.2
1795 Male, age 51, unknown 21.5
Periaquaductal grey, dorsal
nTPM: 16.9
1840 Male, age 53, unknown 19.5
1831 Male, age 72, unknown 17.7
2850 Male, age 76, both hemispheres 16.1
2464 Female, age 72, unknown 14.4
Periaquaductal grey, lateral
nTPM: 14.8
2272 Male, age 74, both hemispheres 17.0
2140 Male, age 76, both hemispheres 14.0
2053 Male, age 18, unknown 13.5
Pretectal area
nTPM: 28.0
1816 Male, age 51, unknown 43.7
1944 Female, age 72, unknown 42.6
1815 Male, age 53, unknown 37.3
1817 Female, age 42, unknown 35.5
2007 Male, age 72, unknown 33.2
2667 Female, age 75, unknown 31.8
2224 Female, age 72, unknown 20.8
2273 Male, age 74, both hemispheres 17.3
2407 Male, age 75, both hemispheres 16.1
2825 Male, age 18, unknown 16.1
2316 Male, age 76, right hemisphere 13.9
Red nucleus
nTPM: 10.8
2785 Male, age 18, unknown 16.6
2584 Male, age 75, left hemisphere 15.9
2503 Female, age 72, unknown 13.8
2588 Male, age 74, left hemisphere 13.4
1821 Female, age 72, unknown 11.6
2823 Male, age 76, right hemisphere 11.4
1904 Male, age 53, unknown 9.7
1954 Female, age 42, unknown 8.9
2725 Female, age 75, unknown 8.0
1865 Male, age 51, unknown 7.5
2769 Male, age 72, unknown 6.7
2227 Male, age 72, unknown 6.5
Substantia nigra
nTPM: 29.1
2241 Male, age 72, unknown 55.9
1889 Female, age 72, unknown 39.2
1916 Female, age 42, unknown 32.3
1851 Male, age 51, unknown 31.9
2409 Female, age 72, unknown 28.7
1941 Male, age 53, unknown 28.4
2699 Male, age 18, unknown 23.5
2590 Female, age 75, unknown 20.0
2665 Male, age 74, both hemispheres 18.5
2583 Male, age 75, right hemisphere 12.6
Superior colliculus
nTPM: 21.3
2087 Female, age 72, unknown 37.4
2668 Female, age 75, unknown 29.6
1796 Male, age 53, unknown 25.4
2261 Male, age 18, unknown 21.4
1895 Male, age 76, right hemisphere 20.9
1913 Female, age 42, unknown 19.2
1995 Male, age 72, unknown 15.4
2664 Male, age 75, both hemispheres 15.3
2587 Male, age 74, left hemisphere 14.4
1839 Male, age 51, unknown 14.0
Ventral tegmental area
nTPM: 33.4
1942 Male, age 51, unknown 49.3
2218 Male, age 76, both hemispheres 48.5
1915 Female, age 42, unknown 30.5
2410 Female, age 72, unknown 30.3
2021 Male, age 53, unknown 21.1
2223 Female, age 72, unknown 20.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.3
Samples: 183

Max nTPM: 82.4
Min nTPM: 0.2
Std nTPM: 14.4
Median nTPM: 9.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 82.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 73.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 67.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 65.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 48.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 48.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 44.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 43.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 43.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 43.6
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 42.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.1
FF:10158-103A5 76 years, female 7.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.6
Samples: 4

Max nTPM: 70.4
Min nTPM: 8.3
Sample A Female 60.5
Sample B Female 35.1
Sample C Male 70.4
Sample D Male 8.3
Midbrain
nTPM: 41.9
Samples: 4

Max nTPM: 98.4
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 23.7
Sample C Male 98.4
Sample D Male 37.4
Periaqueductal gray
nTPM: 23.5
Samples: 3

Max nTPM: 28.9
Min nTPM: 16.4
Sample B Female 16.4
Sample C Male 28.9
Sample D Male 25.1
Superior colliculi
nTPM: 48.8
Samples: 4

Max nTPM: 100.2
Min nTPM: 24.6
Sample A Female 24.6
Sample B Female 36.6
Sample C Male 100.2
Sample D Male 33.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 73.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.4
Samples: 4

Max nTPM: 76.5
Min nTPM: 69.6
Sample A Male 69.6
Sample B Male 76.5
Sample C Female 74.9
Sample D Female 72.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
71924387 Antisense, RP_050623_03_E01, Mouse strain C57BL/6J (56 days, male) 2.0
70546039 Antisense, RP_050623_03_E01, Mouse strain C57BL/6J (56 days, male) 1.8

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