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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
114.2
Sample id
Sample description
nTPM
Amygdala nTPM: 110.6
2814
Male, age 76, right hemisphere
132.5
2695
Female, age 67, right hemisphere
124.1
2514
Male, age 75, right hemisphere
99.8
1987
Female, age 91, left hemisphere
98.6
2517
Female, age 94, left hemisphere
97.9
Basal amygdala nTPM: 108.1
2110
Male, age 80, left hemisphere
135.3
2609
Male, age 75, right hemisphere
122.1
2243
Female, age 91, right hemisphere
103.8
2685
Female, age 94, left hemisphere
103.8
1955
Male, age 76, both hemispheres
98.3
2827
Female, age 67, right hemisphere
85.1
Central amygdala nTPM: 114.2
2826
Female, age 94, left hemisphere
151.3
1905
Male, age 76, both hemispheres
118.0
2515
Male, age 75, right hemisphere
115.3
2239
Male, age 80, left hemisphere
98.7
2701
Female, age 91, right hemisphere
87.6
Corticomedial amygdala nTPM: 96.5
2829
Male, age 80, left hemisphere
124.8
2428
Male, age 75, right hemisphere
110.1
2242
Female, age 91, right hemisphere
94.0
2429
Female, age 94, left hemisphere
93.4
2240
Male, age 76, both hemispheres
81.2
2535
Female, age 67, right hemisphere
75.4
Lateral amygdala nTPM: 109.4
2534
Female, age 94, left hemisphere
128.7
1883
Male, age 76, both hemispheres
121.8
2516
Male, age 75, right hemisphere
116.4
2830
Female, age 67, right hemisphere
106.5
2256
Male, age 80, left hemisphere
92.4
2255
Female, age 91, right hemisphere
90.5
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
183.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 183.9
Samples: 181
Max nTPM: 355.9
Min nTPM: 115.2
Std nTPM: 38.6
Median nTPM: 177.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
355.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
336.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
287.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
284.3
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
275.0
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
274.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
263.6
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
254.4
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
251.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
251.2
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
248.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
246.1
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
242.0
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
241.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
239.6
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
237.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
236.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
236.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
233.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
232.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
232.5
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
228.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
228.0
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
227.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
223.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
222.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
221.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
219.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
218.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
218.4
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
218.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
216.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
216.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
214.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
206.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
206.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
206.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
205.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
204.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
204.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
203.7
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
203.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
203.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
202.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
202.2
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
202.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
201.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
201.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
200.4
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
200.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
200.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
199.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
198.8
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
198.7
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
198.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
197.7
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
197.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
196.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
195.5
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
195.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
194.1
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
193.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
193.6
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
193.3
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
192.4
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
191.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
191.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
189.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
187.6
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
187.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
187.0
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
186.9
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
186.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
186.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
185.1
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
185.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
184.7
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
183.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
182.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
182.7
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
182.1
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
181.2
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
181.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
180.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
179.7
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
178.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
178.6
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
178.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
178.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
177.9
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
177.7
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
177.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
177.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
177.0
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
176.9
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
176.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
176.7
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
176.3
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
176.2
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
176.0
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
175.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
175.1
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
175.1
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
174.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
173.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
173.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
173.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
173.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
172.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
172.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
172.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
171.4
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
170.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
170.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
168.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
167.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
167.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
167.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
166.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
165.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
165.7
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
165.6
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
164.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
164.4
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
164.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
164.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
163.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
163.9
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
163.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
163.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
163.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
163.2
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
163.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
162.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
161.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
159.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
159.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
158.8
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
157.6
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
157.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
157.2
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
156.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
155.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
154.4
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
154.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
152.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
152.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
152.4
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
152.0
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
150.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
150.7
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
149.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
149.0
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
148.5
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
148.1
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
147.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
147.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
146.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
144.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
143.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
142.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
138.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
137.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
136.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
136.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
135.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
134.7
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
133.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
132.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
131.4
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
127.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
127.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
126.4
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
124.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
124.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
123.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
121.7
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
121.6
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
121.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
117.1
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
115.2
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
122.4
Pig sample
Sample description
nTPM
Amygdala nTPM: 122.5
Samples: 4
Max nTPM: 160.4
Min nTPM: 93.5
Sample A
Female
160.4
Sample B
Female
118.9
Sample C
Male
117.0
Sample D
Male
93.5
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
101.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 101.6
Samples: 4
Max nTPM: 106.3
Min nTPM: 97.8
Sample A
Male
103.4
Sample B
Male
98.7
Sample C
Female
106.3
Sample D
Female
97.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
