MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:189.7 nTPM
HPA Brain:149.6 nTPM
GTEx:189.7 nTPM
FANTOM5:40.0 Scaled Tags Per Million
Pig:244.1 nTPM
Mouse:158.1 nTPM
Allen mouse:4.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 149.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 126.1
2666 Male, age 74, left hemisphere 184.2
1827 Male, age 72, unknown 138.1
2411 Female, age 72, unknown 136.1
2019 Male, age 18, unknown 130.0
2828 Female, age 72, unknown 120.2
1833 Male, age 53, unknown 117.8
2586 Male, age 75, left hemisphere 117.3
1870 Female, age 42, unknown 111.5
1830 Male, age 51, unknown 107.6
2219 Male, age 76, both hemispheres 98.1
Dorsal raphe nucleus
nTPM: 140.8
2298 Female, age 72, unknown 172.6
2047 Male, age 72, unknown 153.3
2750 Male, age 76, both hemispheres 132.1
1828 Male, age 53, unknown 131.6
2016 Female, age 72, unknown 114.3
Inferior colliculus
nTPM: 99.9
1848 Female, age 42, unknown 104.1
2849 Male, age 72, unknown 103.8
2097 Female, age 72, unknown 101.1
1890 Male, age 53, unknown 90.4
Median raphe nucleus
nTPM: 149.6
2220 Male, age 76, midline 149.6
Periaquaductal grey, anterior
nTPM: 120.0
1795 Male, age 51, unknown 135.3
1947 Male, age 18, unknown 123.8
2502 Female, age 75, unknown 101.0
Periaquaductal grey, dorsal
nTPM: 103.1
1840 Male, age 53, unknown 107.3
2850 Male, age 76, both hemispheres 105.2
1831 Male, age 72, unknown 100.1
2464 Female, age 72, unknown 100.0
Periaquaductal grey, lateral
nTPM: 100.2
2272 Male, age 74, both hemispheres 109.9
2053 Male, age 18, unknown 100.6
2140 Male, age 76, both hemispheres 90.1
Pretectal area
nTPM: 124.2
2007 Male, age 72, unknown 158.2
1817 Female, age 42, unknown 155.3
1816 Male, age 51, unknown 143.7
1815 Male, age 53, unknown 139.6
1944 Female, age 72, unknown 137.0
2224 Female, age 72, unknown 120.3
2667 Female, age 75, unknown 110.7
2825 Male, age 18, unknown 109.9
2273 Male, age 74, both hemispheres 105.1
2407 Male, age 75, both hemispheres 101.9
2316 Male, age 76, right hemisphere 84.0
Red nucleus
nTPM: 104.5
1821 Female, age 72, unknown 132.0
2725 Female, age 75, unknown 120.1
2785 Male, age 18, unknown 112.7
2584 Male, age 75, left hemisphere 108.5
2588 Male, age 74, left hemisphere 107.6
2503 Female, age 72, unknown 105.1
1954 Female, age 42, unknown 102.2
2769 Male, age 72, unknown 97.0
2227 Male, age 72, unknown 95.9
2823 Male, age 76, right hemisphere 92.8
1904 Male, age 53, unknown 91.7
1865 Male, age 51, unknown 88.2
Substantia nigra
nTPM: 147.7
1916 Female, age 42, unknown 199.5
1941 Male, age 53, unknown 175.9
1851 Male, age 51, unknown 172.2
2665 Male, age 74, both hemispheres 148.9
1889 Female, age 72, unknown 146.2
2241 Male, age 72, unknown 139.7
2699 Male, age 18, unknown 133.1
2409 Female, age 72, unknown 124.2
2590 Female, age 75, unknown 119.9
2583 Male, age 75, right hemisphere 117.0
Superior colliculus
nTPM: 110.8
2668 Female, age 75, unknown 149.1
2087 Female, age 72, unknown 126.7
1796 Male, age 53, unknown 122.0
2587 Male, age 74, left hemisphere 117.3
2261 Male, age 18, unknown 111.7
1839 Male, age 51, unknown 106.9
2664 Male, age 75, both hemispheres 100.1
1895 Male, age 76, right hemisphere 97.5
1913 Female, age 42, unknown 94.1
1995 Male, age 72, unknown 82.3
Ventral tegmental area
nTPM: 129.9
1915 Female, age 42, unknown 157.6
2410 Female, age 72, unknown 156.2
2218 Male, age 76, both hemispheres 130.3
1942 Male, age 51, unknown 112.8
2021 Male, age 53, unknown 111.4
2223 Female, age 72, unknown 111.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 189.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 189.7
Samples: 183

Max nTPM: 379.0
Min nTPM: 109.6
Std nTPM: 46.3
Median nTPM: 179.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 379.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 373.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 307.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 303.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 298.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 291.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 280.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 280.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 279.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 279.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 275.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.0
FF:10158-103A5 76 years, female 40.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 244.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 221.8
Samples: 4

Max nTPM: 285.1
Min nTPM: 185.4
Sample A Female 285.1
Sample B Female 197.4
Sample C Male 219.1
Sample D Male 185.4
Midbrain
nTPM: 227.7
Samples: 4

Max nTPM: 297.5
Min nTPM: 191.6
Sample A Female 297.5
Sample B Female 210.1
Sample C Male 211.6
Sample D Male 191.6
Periaqueductal gray
nTPM: 192.2
Samples: 3

Max nTPM: 212.3
Min nTPM: 176.6
Sample B Female 187.7
Sample C Male 212.3
Sample D Male 176.6
Superior colliculi
nTPM: 244.2
Samples: 4

Max nTPM: 291.4
Min nTPM: 214.4
Sample A Female 291.4
Sample B Female 246.9
Sample C Male 223.9
Sample D Male 214.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 158.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 158.1
Samples: 4

Max nTPM: 165.0
Min nTPM: 153.4
Sample A Male 155.2
Sample B Male 153.4
Sample C Female 158.9
Sample D Female 165.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
79544798 Antisense, RP_071018_01_C08, Mouse strain C57BL/6J (56 days, male) 4.9

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