On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
330.5
nTPM
HPA Brain:
575.5
nTPM
GTEx:
330.5
nTPM
FANTOM5:
517.8
Scaled Tags Per Million
Macaque:
39.7
nTPM
Mouse:
749.9
nTPM
Rat:
731.5
nTPM
Pig:
581.0
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
575.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 406.8
2666
Male, age 74, left hemisphere
509.2
1827
Male, age 72, unknown
473.5
2219
Male, age 76, both hemispheres
442.5
2586
Male, age 75, left hemisphere
423.1
2828
Female, age 72, unknown
408.7
1870
Female, age 42, unknown
396.7
2411
Female, age 72, unknown
387.7
1833
Male, age 53, unknown
355.9
2019
Male, age 18, unknown
348.6
1830
Male, age 51, unknown
321.8
Dorsal raphe nucleus nTPM: 410.5
2298
Female, age 72, unknown
507.6
2047
Male, age 72, unknown
430.7
2750
Male, age 76, both hemispheres
422.7
1828
Male, age 53, unknown
413.6
2016
Female, age 72, unknown
278.0
Inferior colliculus nTPM: 402.2
2097
Female, age 72, unknown
456.4
2849
Male, age 72, unknown
411.4
1848
Female, age 42, unknown
379.3
1890
Male, age 53, unknown
361.6
Median raphe nucleus nTPM: 575.5
2220
Male, age 76, midline
575.5
Periaquaductal grey, anterior nTPM: 478.5
1795
Male, age 51, unknown
550.8
1947
Male, age 18, unknown
499.7
2502
Female, age 75, unknown
385.0
Periaquaductal grey, dorsal nTPM: 379.9
2850
Male, age 76, both hemispheres
419.9
1831
Male, age 72, unknown
408.2
1840
Male, age 53, unknown
359.8
2464
Female, age 72, unknown
331.8
Periaquaductal grey, lateral nTPM: 359.2
2272
Male, age 74, both hemispheres
392.0
2053
Male, age 18, unknown
354.9
2140
Male, age 76, both hemispheres
330.7
Pretectal area nTPM: 475.3
1816
Male, age 51, unknown
632.1
1817
Female, age 42, unknown
614.0
2007
Male, age 72, unknown
582.8
1944
Female, age 72, unknown
574.1
1815
Male, age 53, unknown
520.0
2667
Female, age 75, unknown
494.0
2224
Female, age 72, unknown
468.6
2825
Male, age 18, unknown
411.9
2273
Male, age 74, both hemispheres
338.2
2407
Male, age 75, both hemispheres
299.7
2316
Male, age 76, right hemisphere
292.7
Red nucleus nTPM: 364.8
2584
Male, age 75, left hemisphere
424.7
2725
Female, age 75, unknown
415.6
2785
Male, age 18, unknown
414.5
1821
Female, age 72, unknown
398.9
2503
Female, age 72, unknown
357.7
1954
Female, age 42, unknown
354.2
2769
Male, age 72, unknown
346.9
2227
Male, age 72, unknown
344.7
2823
Male, age 76, right hemisphere
342.5
1904
Male, age 53, unknown
338.0
1865
Male, age 51, unknown
327.1
2588
Male, age 74, left hemisphere
312.5
Substantia nigra nTPM: 455.9
1916
Female, age 42, unknown
625.3
1941
Male, age 53, unknown
546.0
1889
Female, age 72, unknown
531.8
1851
Male, age 51, unknown
485.8
2665
Male, age 74, both hemispheres
484.9
2583
Male, age 75, right hemisphere
425.0
2699
Male, age 18, unknown
411.8
2241
Male, age 72, unknown
357.5
2409
Female, age 72, unknown
349.7
2590
Female, age 75, unknown
341.3
Superior colliculus nTPM: 416.3
2668
Female, age 75, unknown
534.9
1796
Male, age 53, unknown
525.7
2087
Female, age 72, unknown
483.4
2261
Male, age 18, unknown
479.5
2587
Male, age 74, left hemisphere
401.0
1913
Female, age 42, unknown
370.6
1839
Male, age 51, unknown
370.1
1895
Male, age 76, right hemisphere
359.6
2664
Male, age 75, both hemispheres
319.5
1995
Male, age 72, unknown
319.2
Ventral tegmental area nTPM: 461.2
2218
Male, age 76, both hemispheres
582.3
1915
Female, age 42, unknown
511.3
2410
Female, age 72, unknown
475.0
2223
Female, age 72, unknown
443.4
1942
Male, age 51, unknown
401.7
2021
Male, age 53, unknown
353.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
330.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 330.5
Samples: 183
Max nTPM: 769.3
Min nTPM: 120.3
Std nTPM: 137.3
Median nTPM: 286.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
769.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
755.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
737.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
735.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
703.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
664.6
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
640.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
638.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
628.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
609.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
608.8
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
604.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
591.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
583.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
565.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
557.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
557.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
544.5
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
542.8
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
528.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
525.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
520.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
503.5
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
499.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
495.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
489.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
474.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
470.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
467.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
464.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
461.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
460.4
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
453.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
448.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
447.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
441.9
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
435.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
431.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
429.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
421.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
420.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
403.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
402.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
399.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
392.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
389.2
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
387.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
386.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
379.3
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
379.2
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
379.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
377.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
376.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
375.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
374.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
374.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
373.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
373.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
368.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
365.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
362.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
361.4
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
358.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
355.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
342.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
341.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
338.6
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
330.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
330.1
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
328.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
325.3
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
325.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
324.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
324.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
323.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
315.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
312.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
306.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
305.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
300.4
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
299.6
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
298.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
297.3
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
296.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
295.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
294.3
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
294.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
293.1
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
291.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
290.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
288.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
286.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
282.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
282.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
280.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
278.1
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
277.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
276.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
275.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
275.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
274.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
274.5
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
273.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
273.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
272.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
270.6
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
269.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
268.9
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
266.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
264.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
262.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
262.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
261.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
260.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
260.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
259.8
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
257.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
257.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
255.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
253.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
253.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
249.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
249.9
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
249.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
249.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
247.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
245.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
245.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
243.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
241.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
240.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
239.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
239.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
238.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
238.0
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
234.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
234.2
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
234.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
233.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
233.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
232.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
231.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
230.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
227.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
227.7
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
226.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
226.3
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
223.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
221.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
221.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
220.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
219.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
219.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
216.4
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
215.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
214.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
213.0
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
211.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
209.3
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
208.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
205.6
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
204.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
201.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
195.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
194.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
191.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
188.4
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
183.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
182.3
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
181.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
179.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
175.9
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
175.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
174.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
169.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
165.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
163.3
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
153.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
152.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
148.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
138.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
122.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
120.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.7
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 14.9
Samples: 1
Max nTPM: 14.9
Min nTPM: 14.9
Sample A
14.9
Midbrain nTPM: 21.3
Samples: 1
Max nTPM: 21.3
Min nTPM: 21.3
Sample A
21.3
Superior colliculi nTPM: 39.7
Samples: 1
Max nTPM: 39.7
Min nTPM: 39.7
Sample A
39.7
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
581.0
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 577.8
Samples: 3
Max nTPM: 687.0
Min nTPM: 374.4
Sample A
Female
671.9
Sample B
Female
374.4
Sample C
Male
687.0
Midbrain nTPM: 581.0
Samples: 3
Max nTPM: 771.6
Min nTPM: 427.1
Sample B
Female
427.1
Sample C
Male
771.6
Sample D
Male
544.3
Periaqueductal gray nTPM: 426.8
Samples: 3
Max nTPM: 545.3
Min nTPM: 362.1
Sample B
Female
373.1
Sample C
Male
545.3
Sample D
Male
362.1
Superior colliculi nTPM: 579.0
Samples: 4
Max nTPM: 685.1
Min nTPM: 399.2
Sample A
Female
672.1
Sample B
Female
399.2
Sample C
Male
685.1
Sample D
Male
559.6
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
749.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 749.9
Samples: 4
Max nTPM: 789.9
Min nTPM: 722.1
Sample A
722.5
Sample B
789.9
Sample C
765.0
Sample D
722.1
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
731.5
Rat sample
Sample description
nTPM
Midbrain nTPM: 731.4
Samples: 4
Max nTPM: 787.6
Min nTPM: 638.6
Sample A
738.1
Sample A
787.6
Sample A
761.5
Sample A
638.6
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The Human Protein Atlas project is funded
