MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:239.6 nTPM
HPA Brain:100.1 nTPM
GTEx:239.6 nTPM
FANTOM5:285.9 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 100.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.0
2666 Male, age 74, left hemisphere 140.1
2828 Female, age 72, unknown 99.5
1870 Female, age 42, unknown 91.6
2019 Male, age 18, unknown 87.9
1830 Male, age 51, unknown 82.1
1833 Male, age 53, unknown 79.9
2411 Female, age 72, unknown 62.8
1827 Male, age 72, unknown 62.6
2586 Male, age 75, left hemisphere 46.4
2219 Male, age 76, both hemispheres 37.1
Dorsal raphe nucleus
nTPM: 80.8
1828 Male, age 53, unknown 101.6
2750 Male, age 76, both hemispheres 89.7
2298 Female, age 72, unknown 77.6
2016 Female, age 72, unknown 73.9
2047 Male, age 72, unknown 60.9
Inferior colliculus
nTPM: 72.9
1890 Male, age 53, unknown 77.0
2097 Female, age 72, unknown 74.8
1848 Female, age 42, unknown 71.2
2849 Male, age 72, unknown 68.4
Median raphe nucleus
nTPM: 98.7
2220 Male, age 76, midline 98.7
Periaquaductal grey, anterior
nTPM: 90.9
2502 Female, age 75, unknown 103.8
1947 Male, age 18, unknown 96.7
1795 Male, age 51, unknown 72.2
Periaquaductal grey, dorsal
nTPM: 67.9
2850 Male, age 76, both hemispheres 80.4
1831 Male, age 72, unknown 79.1
2464 Female, age 72, unknown 69.3
1840 Male, age 53, unknown 42.9
Periaquaductal grey, lateral
nTPM: 81.2
2272 Male, age 74, both hemispheres 98.0
2053 Male, age 18, unknown 78.7
2140 Male, age 76, both hemispheres 66.8
Pretectal area
nTPM: 74.9
1817 Female, age 42, unknown 95.2
2667 Female, age 75, unknown 87.0
1944 Female, age 72, unknown 84.6
2007 Male, age 72, unknown 78.7
1815 Male, age 53, unknown 76.0
2316 Male, age 76, right hemisphere 74.0
2224 Female, age 72, unknown 72.5
1816 Male, age 51, unknown 71.1
2273 Male, age 74, both hemispheres 68.8
2825 Male, age 18, unknown 67.7
2407 Male, age 75, both hemispheres 48.5
Red nucleus
nTPM: 100.1
1954 Female, age 42, unknown 135.8
1821 Female, age 72, unknown 117.0
1904 Male, age 53, unknown 109.1
2769 Male, age 72, unknown 106.8
2503 Female, age 72, unknown 101.0
2227 Male, age 72, unknown 100.8
2823 Male, age 76, right hemisphere 100.1
1865 Male, age 51, unknown 99.3
2588 Male, age 74, left hemisphere 97.0
2785 Male, age 18, unknown 96.7
2725 Female, age 75, unknown 78.9
2584 Male, age 75, left hemisphere 59.3
Substantia nigra
nTPM: 84.4
2665 Male, age 74, both hemispheres 145.9
1851 Male, age 51, unknown 99.5
2699 Male, age 18, unknown 91.9
1889 Female, age 72, unknown 87.4
1916 Female, age 42, unknown 83.4
2590 Female, age 75, unknown 74.9
2409 Female, age 72, unknown 73.5
1941 Male, age 53, unknown 73.2
2241 Male, age 72, unknown 70.1
2583 Male, age 75, right hemisphere 43.9
Superior colliculus
nTPM: 74.0
1995 Male, age 72, unknown 96.6
2587 Male, age 74, left hemisphere 91.9
2087 Female, age 72, unknown 91.7
1796 Male, age 53, unknown 84.1
1913 Female, age 42, unknown 75.0
2668 Female, age 75, unknown 71.6
1839 Male, age 51, unknown 69.8
1895 Male, age 76, right hemisphere 57.8
2261 Male, age 18, unknown 56.3
2664 Male, age 75, both hemispheres 45.8
Ventral tegmental area
nTPM: 91.0
1915 Female, age 42, unknown 107.4
2218 Male, age 76, both hemispheres 105.3
2223 Female, age 72, unknown 96.8
1942 Male, age 51, unknown 87.6
2021 Male, age 53, unknown 79.0
2410 Female, age 72, unknown 69.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 239.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 239.6
Samples: 183

Max nTPM: 3800.1
Min nTPM: 32.5
Std nTPM: 315.2
Median nTPM: 188.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 3800.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1581.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1071.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 800.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 722.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 629.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 607.7
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 597.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 573.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 507.6
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 477.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 285.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 285.9
FF:10158-103A5 76 years, female 285.9

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