MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.1 nTPM
HPA Brain:149.3 nTPM
GTEx:48.1 nTPM
FANTOM5:207.3 Scaled Tags Per Million
Pig:38.6 nTPM
Mouse:19.7 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 149.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.0
2019 Male, age 18, unknown 145.1
2411 Female, age 72, unknown 143.8
1830 Male, age 51, unknown 134.9
2586 Male, age 75, left hemisphere 133.2
1870 Female, age 42, unknown 131.9
1833 Male, age 53, unknown 131.4
2828 Female, age 72, unknown 109.5
2666 Male, age 74, left hemisphere 101.1
1827 Male, age 72, unknown 90.7
2219 Male, age 76, both hemispheres 87.8
Dorsal raphe nucleus
nTPM: 89.7
2750 Male, age 76, both hemispheres 139.3
1828 Male, age 53, unknown 91.9
2047 Male, age 72, unknown 78.3
2016 Female, age 72, unknown 77.8
2298 Female, age 72, unknown 61.2
Inferior colliculus
nTPM: 81.8
1890 Male, age 53, unknown 92.1
1848 Female, age 42, unknown 84.9
2849 Male, age 72, unknown 76.9
2097 Female, age 72, unknown 73.4
Median raphe nucleus
nTPM: 93.0
2220 Male, age 76, midline 93.0
Periaquaductal grey, anterior
nTPM: 81.0
2502 Female, age 75, unknown 91.2
1947 Male, age 18, unknown 82.2
1795 Male, age 51, unknown 69.7
Periaquaductal grey, dorsal
nTPM: 66.0
2464 Female, age 72, unknown 86.7
1831 Male, age 72, unknown 75.6
1840 Male, age 53, unknown 51.7
2850 Male, age 76, both hemispheres 49.8
Periaquaductal grey, lateral
nTPM: 71.2
2272 Male, age 74, both hemispheres 81.0
2053 Male, age 18, unknown 80.4
2140 Male, age 76, both hemispheres 52.2
Pretectal area
nTPM: 88.1
1815 Male, age 53, unknown 111.1
2407 Male, age 75, both hemispheres 106.5
2007 Male, age 72, unknown 102.7
1817 Female, age 42, unknown 100.6
2667 Female, age 75, unknown 86.1
1944 Female, age 72, unknown 81.6
1816 Male, age 51, unknown 80.7
2316 Male, age 76, right hemisphere 79.8
2825 Male, age 18, unknown 79.0
2273 Male, age 74, both hemispheres 75.0
2224 Female, age 72, unknown 66.3
Red nucleus
nTPM: 149.3
1865 Male, age 51, unknown 177.8
1904 Male, age 53, unknown 169.1
2588 Male, age 74, left hemisphere 158.9
2769 Male, age 72, unknown 156.6
2584 Male, age 75, left hemisphere 155.8
1821 Female, age 72, unknown 154.6
2785 Male, age 18, unknown 148.9
2227 Male, age 72, unknown 146.6
2503 Female, age 72, unknown 145.5
2823 Male, age 76, right hemisphere 138.2
1954 Female, age 42, unknown 131.1
2725 Female, age 75, unknown 108.1
Substantia nigra
nTPM: 102.0
2583 Male, age 75, right hemisphere 156.4
2590 Female, age 75, unknown 118.5
1851 Male, age 51, unknown 111.7
1889 Female, age 72, unknown 106.8
2409 Female, age 72, unknown 97.4
1916 Female, age 42, unknown 92.4
1941 Male, age 53, unknown 90.3
2699 Male, age 18, unknown 86.0
2241 Male, age 72, unknown 83.2
2665 Male, age 74, both hemispheres 77.4
Superior colliculus
nTPM: 100.8
1913 Female, age 42, unknown 134.3
1995 Male, age 72, unknown 126.1
2587 Male, age 74, left hemisphere 107.8
2668 Female, age 75, unknown 103.0
1839 Male, age 51, unknown 96.4
2664 Male, age 75, both hemispheres 94.4
1895 Male, age 76, right hemisphere 89.5
2261 Male, age 18, unknown 88.7
1796 Male, age 53, unknown 85.5
2087 Female, age 72, unknown 82.9
Ventral tegmental area
nTPM: 113.7
2223 Female, age 72, unknown 171.3
2410 Female, age 72, unknown 134.3
2218 Male, age 76, both hemispheres 101.0
1942 Male, age 51, unknown 93.3
1915 Female, age 42, unknown 91.3
2021 Male, age 53, unknown 91.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.1
Samples: 183

Max nTPM: 179.1
Min nTPM: 10.2
Std nTPM: 24.3
Median nTPM: 41.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 179.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 126.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 123.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 123.3
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 114.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 113.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 112.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 109.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 107.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 99.8
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 95.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 207.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 207.3
FF:10158-103A5 76 years, female 207.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.3
Samples: 4

Max nTPM: 38.0
Min nTPM: 25.3
Sample A Female 36.4
Sample B Female 25.3
Sample C Male 38.0
Sample D Male 29.4
Midbrain
nTPM: 38.6
Samples: 4

Max nTPM: 50.9
Min nTPM: 26.8
Sample A Female 44.2
Sample B Female 26.8
Sample C Male 50.9
Sample D Male 32.4
Periaqueductal gray
nTPM: 26.8
Samples: 3

Max nTPM: 28.0
Min nTPM: 26.2
Sample B Female 26.2
Sample C Male 28.0
Sample D Male 26.2
Superior colliculi
nTPM: 34.5
Samples: 4

Max nTPM: 44.3
Min nTPM: 25.2
Sample A Female 32.5
Sample B Female 25.2
Sample C Male 44.3
Sample D Male 36.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.7
Samples: 4

Max nTPM: 21.6
Min nTPM: 17.8
Sample A Male 18.1
Sample B Male 17.8
Sample C Female 21.6
Sample D Female 21.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69528046 Antisense, RP_050421_03_A04, Mouse strain C57BL/6J (56 days, male) 0.9
73520965 Antisense, RP_051017_04_E05, Mouse strain C57BL/6J (56 days, male) 0.1

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