MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.9 nTPM
HPA Brain:114.5 nTPM
GTEx:32.9 nTPM
FANTOM5:195.1 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:0.7 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 114.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.9
2666 Male, age 74, left hemisphere 124.3
2019 Male, age 18, unknown 96.8
1830 Male, age 51, unknown 96.0
2586 Male, age 75, left hemisphere 95.6
1833 Male, age 53, unknown 95.1
1870 Female, age 42, unknown 93.3
2411 Female, age 72, unknown 84.5
2828 Female, age 72, unknown 72.6
1827 Male, age 72, unknown 60.9
2219 Male, age 76, both hemispheres 50.2
Dorsal raphe nucleus
nTPM: 45.1
2750 Male, age 76, both hemispheres 90.9
1828 Male, age 53, unknown 47.1
2016 Female, age 72, unknown 44.9
2047 Male, age 72, unknown 22.9
2298 Female, age 72, unknown 19.7
Inferior colliculus
nTPM: 41.9
1890 Male, age 53, unknown 45.1
1848 Female, age 42, unknown 44.3
2849 Male, age 72, unknown 43.6
2097 Female, age 72, unknown 34.6
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 41.0
1947 Male, age 18, unknown 46.8
2502 Female, age 75, unknown 40.4
1795 Male, age 51, unknown 35.8
Periaquaductal grey, dorsal
nTPM: 29.6
2464 Female, age 72, unknown 49.6
1831 Male, age 72, unknown 38.7
1840 Male, age 53, unknown 15.9
2850 Male, age 76, both hemispheres 14.1
Periaquaductal grey, lateral
nTPM: 34.5
2272 Male, age 74, both hemispheres 49.0
2053 Male, age 18, unknown 41.0
2140 Male, age 76, both hemispheres 13.6
Pretectal area
nTPM: 49.9
1815 Male, age 53, unknown 81.1
2316 Male, age 76, right hemisphere 63.1
2007 Male, age 72, unknown 61.7
2407 Male, age 75, both hemispheres 59.9
1817 Female, age 42, unknown 58.9
2825 Male, age 18, unknown 48.2
1816 Male, age 51, unknown 41.6
1944 Female, age 72, unknown 40.3
2273 Male, age 74, both hemispheres 36.8
2224 Female, age 72, unknown 31.8
2667 Female, age 75, unknown 25.4
Red nucleus
nTPM: 114.5
1865 Male, age 51, unknown 142.5
2823 Male, age 76, right hemisphere 140.0
2503 Female, age 72, unknown 131.8
1821 Female, age 72, unknown 127.5
2725 Female, age 75, unknown 126.8
1904 Male, age 53, unknown 125.9
2227 Male, age 72, unknown 119.6
2769 Male, age 72, unknown 107.7
2785 Male, age 18, unknown 105.2
1954 Female, age 42, unknown 100.4
2584 Male, age 75, left hemisphere 78.4
2588 Male, age 74, left hemisphere 68.4
Substantia nigra
nTPM: 69.8
2590 Female, age 75, unknown 117.5
2583 Male, age 75, right hemisphere 114.8
2409 Female, age 72, unknown 90.9
1851 Male, age 51, unknown 67.6
1889 Female, age 72, unknown 60.4
2699 Male, age 18, unknown 58.0
2665 Male, age 74, both hemispheres 56.4
2241 Male, age 72, unknown 49.7
1941 Male, age 53, unknown 42.8
1916 Female, age 42, unknown 39.6
Superior colliculus
nTPM: 65.7
2587 Male, age 74, left hemisphere 93.8
1995 Male, age 72, unknown 92.1
1913 Female, age 42, unknown 91.8
1895 Male, age 76, right hemisphere 73.0
1839 Male, age 51, unknown 63.6
2668 Female, age 75, unknown 57.4
1796 Male, age 53, unknown 53.1
2087 Female, age 72, unknown 45.4
2664 Male, age 75, both hemispheres 45.1
2261 Male, age 18, unknown 41.7
Ventral tegmental area
nTPM: 60.7
2223 Female, age 72, unknown 81.4
2410 Female, age 72, unknown 71.4
2021 Male, age 53, unknown 60.3
1915 Female, age 42, unknown 50.8
1942 Male, age 51, unknown 50.8
2218 Male, age 76, both hemispheres 49.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.9
Samples: 183

Max nTPM: 133.8
Min nTPM: 2.0
Std nTPM: 21.7
Median nTPM: 25.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 133.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 104.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 104.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 90.3
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 88.8
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 87.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 86.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 85.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 81.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 80.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 77.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 195.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 195.1
FF:10158-103A5 76 years, female 195.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 15.8
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 15.8
Sample C Male 11.2
Sample D Male 12.7
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 29.2
Min nTPM: 5.2
Sample A Female 29.2
Sample B Female 7.2
Sample C Male 12.3
Sample D Male 5.2
Periaqueductal gray
nTPM: 5.5
Samples: 3

Max nTPM: 6.6
Min nTPM: 3.9
Sample B Female 6.6
Sample C Male 3.9
Sample D Male 6.0
Superior colliculi
nTPM: 9.3
Samples: 4

Max nTPM: 15.6
Min nTPM: 5.1
Sample A Female 5.1
Sample B Female 7.9
Sample C Male 15.6
Sample D Male 8.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.6
Sample A Male 0.6
Sample B Male 0.8
Sample C Female 0.6
Sample D Female 0.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70720252 Antisense, RP_050426_03_A11, Mouse strain C57BL/6J (56 days, male) 0.0

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