MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1211.2 nTPM
HPA Brain:314.5 nTPM
GTEx:1211.2 nTPM
FANTOM5:463.0 Scaled Tags Per Million
Pig:0.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 314.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 282.1
2666 Male, age 74, left hemisphere 310.0
1833 Male, age 53, unknown 300.2
1870 Female, age 42, unknown 299.9
2828 Female, age 72, unknown 296.4
2411 Female, age 72, unknown 294.7
1827 Male, age 72, unknown 286.2
2586 Male, age 75, left hemisphere 284.5
1830 Male, age 51, unknown 273.4
2019 Male, age 18, unknown 265.1
2219 Male, age 76, both hemispheres 210.2
Dorsal raphe nucleus
nTPM: 258.2
2298 Female, age 72, unknown 286.5
2750 Male, age 76, both hemispheres 281.9
2016 Female, age 72, unknown 274.4
1828 Male, age 53, unknown 245.5
2047 Male, age 72, unknown 202.8
Inferior colliculus
nTPM: 273.8
2849 Male, age 72, unknown 300.5
1890 Male, age 53, unknown 277.5
2097 Female, age 72, unknown 272.4
1848 Female, age 42, unknown 244.9
Median raphe nucleus
nTPM: 249.5
2220 Male, age 76, midline 249.5
Periaquaductal grey, anterior
nTPM: 284.9
2502 Female, age 75, unknown 318.7
1947 Male, age 18, unknown 271.3
1795 Male, age 51, unknown 264.7
Periaquaductal grey, dorsal
nTPM: 267.2
1831 Male, age 72, unknown 292.3
1840 Male, age 53, unknown 285.9
2850 Male, age 76, both hemispheres 250.5
2464 Female, age 72, unknown 239.9
Periaquaductal grey, lateral
nTPM: 258.4
2053 Male, age 18, unknown 286.8
2140 Male, age 76, both hemispheres 278.5
2272 Male, age 74, both hemispheres 210.0
Pretectal area
nTPM: 258.1
2316 Male, age 76, right hemisphere 308.9
2825 Male, age 18, unknown 285.6
1815 Male, age 53, unknown 279.8
1817 Female, age 42, unknown 268.6
2007 Male, age 72, unknown 267.7
1816 Male, age 51, unknown 254.0
1944 Female, age 72, unknown 243.3
2224 Female, age 72, unknown 240.4
2407 Male, age 75, both hemispheres 239.7
2273 Male, age 74, both hemispheres 226.9
2667 Female, age 75, unknown 224.3
Red nucleus
nTPM: 314.5
2503 Female, age 72, unknown 378.0
1821 Female, age 72, unknown 351.8
2584 Male, age 75, left hemisphere 334.9
2725 Female, age 75, unknown 330.3
1904 Male, age 53, unknown 326.2
2588 Male, age 74, left hemisphere 325.7
1865 Male, age 51, unknown 325.2
2227 Male, age 72, unknown 312.2
2769 Male, age 72, unknown 296.3
1954 Female, age 42, unknown 273.0
2823 Male, age 76, right hemisphere 269.0
2785 Male, age 18, unknown 251.6
Substantia nigra
nTPM: 310.5
2699 Male, age 18, unknown 370.8
1851 Male, age 51, unknown 369.2
2665 Male, age 74, both hemispheres 342.3
1916 Female, age 42, unknown 330.4
2409 Female, age 72, unknown 316.6
2590 Female, age 75, unknown 312.0
1889 Female, age 72, unknown 291.2
1941 Male, age 53, unknown 260.0
2583 Male, age 75, right hemisphere 257.6
2241 Male, age 72, unknown 254.3
Superior colliculus
nTPM: 298.2
2587 Male, age 74, left hemisphere 396.4
1995 Male, age 72, unknown 369.5
1913 Female, age 42, unknown 354.2
1839 Male, age 51, unknown 289.3
2668 Female, age 75, unknown 279.7
1796 Male, age 53, unknown 277.2
2261 Male, age 18, unknown 269.4
1895 Male, age 76, right hemisphere 260.9
2087 Female, age 72, unknown 245.9
2664 Male, age 75, both hemispheres 239.1
Ventral tegmental area
nTPM: 299.1
1915 Female, age 42, unknown 345.5
2223 Female, age 72, unknown 312.1
2410 Female, age 72, unknown 307.0
2021 Male, age 53, unknown 293.8
1942 Male, age 51, unknown 269.7
2218 Male, age 76, both hemispheres 266.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1211.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1211.2
Samples: 183

Max nTPM: 2788.5
Min nTPM: 459.8
Std nTPM: 424.7
Median nTPM: 1173.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2788.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2707.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2662.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2347.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2201.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2162.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 2105.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 2089.8
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1930.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1924.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1912.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 463.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 463.0
FF:10158-103A5 76 years, female 463.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Female 0.6
Sample B Female 0.3
Sample C Male 0.0
Sample D Male 0.3
Midbrain
nTPM: 0.4
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.3
Sample C Male 1.4
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.2
Samples: 3

Max nTPM: 0.7
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.7
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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