On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1211.2
nTPM
HPA Brain:
315.5
nTPM
GTEx:
1211.2
nTPM
FANTOM5:
463.0
Scaled Tags Per Million
Macaque:
353.5
nTPM
Pig:
0.6
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
315.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 283.0
2666
Male, age 74, left hemisphere
311.4
1833
Male, age 53, unknown
301.3
1870
Female, age 42, unknown
300.9
2828
Female, age 72, unknown
297.5
2411
Female, age 72, unknown
295.7
1827
Male, age 72, unknown
287.1
2586
Male, age 75, left hemisphere
284.2
1830
Male, age 51, unknown
274.3
2019
Male, age 18, unknown
266.0
2219
Male, age 76, both hemispheres
211.3
Dorsal raphe nucleus nTPM: 259.3
2298
Female, age 72, unknown
287.6
2750
Male, age 76, both hemispheres
283.3
2016
Female, age 72, unknown
275.6
1828
Male, age 53, unknown
246.4
2047
Male, age 72, unknown
203.4
Inferior colliculus nTPM: 274.8
2849
Male, age 72, unknown
301.6
1890
Male, age 53, unknown
278.5
2097
Female, age 72, unknown
273.4
1848
Female, age 42, unknown
245.7
Median raphe nucleus nTPM: 250.7
2220
Male, age 76, midline
250.7
Periaquaductal grey, anterior nTPM: 285.9
2502
Female, age 75, unknown
319.8
1947
Male, age 18, unknown
272.2
1795
Male, age 51, unknown
265.7
Periaquaductal grey, dorsal nTPM: 268.2
1831
Male, age 72, unknown
293.3
1840
Male, age 53, unknown
286.8
2850
Male, age 76, both hemispheres
251.9
2464
Female, age 72, unknown
240.8
Periaquaductal grey, lateral nTPM: 259.6
2053
Male, age 18, unknown
287.8
2140
Male, age 76, both hemispheres
280.0
2272
Male, age 74, both hemispheres
211.0
Pretectal area nTPM: 258.9
2316
Male, age 76, right hemisphere
310.4
2825
Male, age 18, unknown
286.6
1815
Male, age 53, unknown
280.7
1817
Female, age 42, unknown
269.5
2007
Male, age 72, unknown
268.7
1816
Male, age 51, unknown
254.7
1944
Female, age 72, unknown
244.1
2224
Female, age 72, unknown
241.3
2407
Male, age 75, both hemispheres
239.5
2273
Male, age 74, both hemispheres
227.9
2667
Female, age 75, unknown
225.0
Red nucleus nTPM: 315.5
2503
Female, age 72, unknown
379.2
1821
Female, age 72, unknown
353.0
2584
Male, age 75, left hemisphere
334.5
2725
Female, age 75, unknown
331.5
1904
Male, age 53, unknown
327.6
2588
Male, age 74, left hemisphere
326.9
1865
Male, age 51, unknown
326.3
2227
Male, age 72, unknown
313.2
2769
Male, age 72, unknown
297.3
1954
Female, age 42, unknown
274.0
2823
Male, age 76, right hemisphere
270.4
2785
Male, age 18, unknown
252.5
Substantia nigra nTPM: 311.4
2699
Male, age 18, unknown
372.1
1851
Male, age 51, unknown
370.5
2665
Male, age 74, both hemispheres
343.9
1916
Female, age 42, unknown
331.8
2409
Female, age 72, unknown
317.6
2590
Female, age 75, unknown
313.0
1889
Female, age 72, unknown
292.4
1941
Male, age 53, unknown
260.9
2583
Male, age 75, right hemisphere
257.2
2241
Male, age 72, unknown
255.0
Superior colliculus nTPM: 299.2
2587
Male, age 74, left hemisphere
398.0
1995
Male, age 72, unknown
370.8
1913
Female, age 42, unknown
355.6
1839
Male, age 51, unknown
290.3
2668
Female, age 75, unknown
280.7
1796
Male, age 53, unknown
278.2
2261
Male, age 18, unknown
270.3
1895
Male, age 76, right hemisphere
262.2
2087
Female, age 72, unknown
246.8
2664
Male, age 75, both hemispheres
239.0
Ventral tegmental area nTPM: 300.2
1915
Female, age 42, unknown
346.7
2223
Female, age 72, unknown
313.2
2410
Female, age 72, unknown
308.2
2021
Male, age 53, unknown
294.8
1942
Male, age 51, unknown
270.7
2218
Male, age 76, both hemispheres
267.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1211.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1211.2
Samples: 183
Max nTPM: 2788.5
Min nTPM: 459.8
Std nTPM: 424.7
Median nTPM: 1173.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2788.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2707.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2662.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
2347.9
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
2201.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2162.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2105.7
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
2089.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1930.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1924.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1912.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1876.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1860.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1833.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1794.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1792.8
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1785.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1780.7
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1777.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1755.1
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1741.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1738.7
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1703.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1702.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1694.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1694.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
1693.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1665.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1631.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1616.8
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1592.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1585.0
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1561.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1558.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1557.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1550.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1537.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
1528.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1512.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1509.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1491.1
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1474.9
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1472.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1466.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1439.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1428.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1423.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1415.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1409.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1394.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1394.0
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
1382.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1374.0
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1364.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1345.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1339.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1339.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1337.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1337.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1322.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1315.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1313.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1304.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1303.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1302.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1287.1
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
1284.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1272.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1271.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1270.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1265.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1257.6
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
1250.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1246.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1245.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1244.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1240.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1239.7
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1233.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1232.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1231.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1231.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1228.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1215.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1212.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1210.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1209.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
1188.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1181.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1178.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1173.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1173.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1161.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1147.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1141.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1131.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1113.1
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1102.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1096.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1096.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1094.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1090.7
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1086.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1083.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1080.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1074.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1066.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1054.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1054.2
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1050.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1049.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1049.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1048.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1045.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1029.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1029.0
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
1003.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1002.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1000.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
999.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
994.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
975.0
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
968.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
965.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
964.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
961.2
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
961.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
955.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
954.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
954.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
944.5
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
926.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
920.2
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
920.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
913.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
907.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
903.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
896.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
892.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
891.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
891.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
889.5
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
879.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
879.1
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
878.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
852.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
843.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
843.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
842.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
840.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
840.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
834.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
832.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
831.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
818.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
817.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
811.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
803.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
792.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
788.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
788.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
780.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
777.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
750.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
743.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
741.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
735.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
714.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
683.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
675.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
669.6
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
635.2
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
628.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
625.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
617.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
612.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
567.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
552.6
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
543.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
531.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
522.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
501.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
459.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
353.5
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 353.5
Samples: 1
Max nTPM: 353.5
Min nTPM: 353.5
Sample A
353.5
Midbrain nTPM: 164.5
Samples: 1
Max nTPM: 164.5
Min nTPM: 164.5
Sample A
164.5
Superior colliculi nTPM: 138.8
Samples: 1
Max nTPM: 138.8
Min nTPM: 138.8
Sample A
138.8
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.6
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 0.3
Samples: 3
Max nTPM: 0.6
Min nTPM: 0.0
Sample A
Female
0.6
Sample B
Female
0.3
Sample C
Male
0.0
Midbrain nTPM: 0.6
Samples: 3
Max nTPM: 1.4
Min nTPM: 0.0
Sample B
Female
0.3
Sample C
Male
1.4
Sample D
Male
0.0
Periaqueductal gray nTPM: 0.2
Samples: 3
Max nTPM: 0.7
Min nTPM: 0.0
Sample B
Female
0.0
Sample C
Male
0.7
Sample D
Male
0.0
Superior colliculi nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
Female
0.0
Sample B
Female
0.0
Sample C
Male
0.0
Sample D
Male
0.0
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The Human Protein Atlas project is funded
