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BETA
  • SUMMARY

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  • EVOLUTION

  • RPS23
EVOLUTIONARY RETINA Show tissue menu
BRAIN67 EYE3 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER2 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM8 BREAST & FEMALE REPRODUCTIVE SYSTEM9 MUSCLE & VASCULAR TISSUE11 CONNECTIVE & SOFT TISSUE14 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS
MIDDLE TEMPORAL GYRUS MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL CORTEX
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD WHITE MATTER
CORNEA LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS PENIS PROSTATE SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Eye
Evolutionary methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:435.5 nTPM
GTEx:435.5 nTPM
FANTOM5:391.5 Scaled Tags Per Million
Macaque:118.4 nTPM
Pig:1.3 nTPM
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

435.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 435.5
Samples: 105

Max nTPM: 615.3
Min nTPM: 164.3
Std nTPM: 91.2
Median nTPM:
384_1 83 years, male 615.3
246_1 77 years, male 614.9
229_1 69 years, female 610.7
355_1 70 years, female 606.5
237_1 82 years, male 601.7
321_1 62 years, female 594.4
452_1 88 years, female 593.7
389_1 86 years, female 591.7
396_1 62 years, male 567.0
379_1 60 years, male 563.6
347_1 72 years, male 551.4
35_1 74 years, female 544.9
17_1 71 years, male 543.6
153_1 70 years, female 534.2
377_1 82 years, female 533.1
348_1 84 years, male 525.2
526_1 61 years, male 518.9
375_1 74 years, female 518.4
386_1 76 years, male 513.4
353_1 82 years, female 509.0
2_1 77 years, female 508.2
322_1 76 years, male 506.1
447_1 81 years, male 505.4
217_1 76 years, male 502.5
320_1 89 years, female 501.1
376_1 75 years, female 493.3
99_1 64 years, male 488.9
126_1 63 years, male 479.9
81_1 67 years, male 479.7
4_1 88 years, female 479.5
352_1 62 years, male 478.8
6_1 73 years, female 470.4
109_1 81 years, female 466.1
317_1 60 years, male 465.1
307_1 66 years, female 464.6
354_1 81 years, female 464.1
394_1 75 years, female 464.1
218_1 71 years, female 461.7
162_1 79 years, female 460.6
350_1 84 years, female 460.2
351_1 91 years, male 459.6
319_1 81 years, male 458.8
405_1 91 years, male 457.0
120_1 70 years, female 456.0
18_1 88 years, male 453.3
172_1 72 years, female 451.2
404_1 82 years, female 445.9
265_1 87 years, male 445.3
315_1 62 years, female 444.7
173_1 67 years, male 440.6
177_1 74 years, male 439.8
316_1 62 years, male 439.0
137_1 83 years, male 436.2
356_1 87 years, female 436.2
499_1 55 years, female 434.6
311_1 78 years, male 427.6
41_1 94 years, female 427.0
503_1 68 years, male 425.1
517_1 88 years, male 423.3
119_1 70 years, female 422.5
318_1 68 years, male 421.3
163_1 78 years, male 414.9
314_1 67 years, male 414.8
251_1 78 years, male 413.3
189_1 76 years, male 412.3
468_1 89 years, male 410.9
139_1 64 years, female 409.8
291_1 76 years, male 409.2
145_1 84 years, male 406.5
293_1 68 years, female 406.5
89_1 63 years, male 402.1
264_1 73 years, female 401.5
42_1 85 years, male 401.4
292_1 71 years, male 398.0
115_1 83 years, male 396.2
266_1 85 years, male 396.1
335_1 73 years, female 396.1
518_1 75 years, female 394.0
324_1 76 years, male 392.1
295_1 61 years, female 391.6
406_1 79 years, male 390.4
425_1 59 years, female 382.2
243_1 75 years, male 381.5
254_1 77 years, female 380.9
495_1 57 years, female 379.7
117_1 61 years, male 377.1
286_1 68 years, female 376.0
349_1 83 years, male 373.7
480_1 63 years, male 367.6
32_1 67 years, male 366.5
308_1 70 years, female 362.1
142_1 61 years, female 346.0
506_1 65 years, male 338.8
9_1 66 years, female 315.3
501_1 88 years, male 311.1
288_1 66 years, female 308.3
43_1 64 years, female 303.8
466_1 57 years, female 296.4
149_1 88 years, male 276.8
415_1 77 years, female 272.3
414_1 84 years, female 267.4
313_1 79 years, female 265.6
413_1 59 years, female 187.7
491_1 89 years, female 167.1
490_1 67 years, female 164.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

391.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 391.5
FF:10030-101E3 24-65 years, mixed 391.5

RETINA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.4
Macaque sample Sample description nTPM
Retina
nTPM: 118.4
Samples: 2

Max nTPM: 135.4
Min nTPM: 101.4
Sample A 101.4
Sample B 135.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.3
Pig sample Sample description nTPM
Retina
nTPM: 1.3
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.7
Sample A Female 1.2
Sample B Female 1.8
Sample C Male 0.7
Sample D Male 1.4

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